Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGA1P17096 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGA1P17096 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGA1P17096 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGA1P17096 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.13■□□□□ 0.49
HMGA1P17096 DNAJB3-201ENST00000446806 729 ntBASIC18.13■□□□□ 0.49
HMGA1P17096 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.13■□□□□ 0.49
HMGA1P17096 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGA1P17096 GGTLC5P-201ENST00000617623 998 ntBASIC18.13■□□□□ 0.49
HMGA1P17096 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
HMGA1P17096 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
HMGA1P17096 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HMGA1P17096 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGA1P17096 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
HMGA1P17096 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 MCCD1P2-201ENST00000423228 335 ntBASIC18.12■□□□□ 0.49
HMGA1P17096 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGA1P17096 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGA1P17096 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGA1P17096 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGA1P17096 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGA1P17096 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGA1P17096 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
HMGA1P17096 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
HMGA1P17096 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGA1P17096 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGA1P17096 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HMGA1P17096 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HMGA1P17096 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.11■□□□□ 0.49
HMGA1P17096 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGA1P17096 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGA1P17096 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGA1P17096 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGA1P17096 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGA1P17096 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGA1P17096 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGA1P17096 MTDHP5-201ENST00000598980 586 ntBASIC18.11■□□□□ 0.49
HMGA1P17096 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGA1P17096 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGA1P17096 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGA1P17096 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGA1P17096 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGA1P17096 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
HMGA1P17096 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGA1P17096 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGA1P17096 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
HMGA1P17096 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
HMGA1P17096 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.11■□□□□ 0.49
HMGA1P17096 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HMGA1P17096 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGA1P17096 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGA1P17096 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HMGA1P17096 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGA1P17096 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HMGA1P17096 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HMGA1P17096 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HMGA1P17096 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HMGA1P17096 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGA1P17096 PI4KAP1-204ENST00000612579 1703 ntBASIC18.1■□□□□ 0.49
HMGA1P17096 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGA1P17096 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.1■□□□□ 0.49
HMGA1P17096 AC002310.6-201ENST00000624451 1377 ntBASIC18.1■□□□□ 0.49
HMGA1P17096 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGA1P17096 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGA1P17096 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGA1P17096 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGA1P17096 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HMGA1P17096 MIR3687-2-201ENST00000577708 61 ntBASIC18.1■□□□□ 0.49
HMGA1P17096 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.1■□□□□ 0.49
HMGA1P17096 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGA1P17096 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGA1P17096 MIR3687-1-201ENST00000614492 61 ntBASIC18.1■□□□□ 0.49
HMGA1P17096 AL691403.2-201ENST00000618460 490 ntBASIC18.1■□□□□ 0.49
HMGA1P17096 AL513190.1-201ENST00000621254 727 ntBASIC18.1■□□□□ 0.49
HMGA1P17096 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGA1P17096 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.1■□□□□ 0.49
HMGA1P17096 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms