Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
HOXC4P09017 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXC4P09017 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 AC008764.6-201ENST00000595909 2069 ntBASIC17.06■□□□□ 0.32
HOXC4P09017 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXC4P09017 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HOXC4P09017 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
HOXC4P09017 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC4P09017 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HOXC4P09017 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXC4P09017 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 LETM1P2-201ENST00000597330 2178 ntBASIC17.05■□□□□ 0.32
HOXC4P09017 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.05■□□□□ 0.32
HOXC4P09017 LYSMD4-203ENST00000378904 2122 ntBASIC17.05■□□□□ 0.32
HOXC4P09017 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HOXC4P09017 MRPL20P1-201ENST00000400819 433 ntBASIC17.05■□□□□ 0.32
HOXC4P09017 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.05■□□□□ 0.32
HOXC4P09017 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.05■□□□□ 0.32
HOXC4P09017 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXC4P09017 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXC4P09017 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.05■□□□□ 0.32
HOXC4P09017 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.05■□□□□ 0.32
HOXC4P09017 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.05■□□□□ 0.32
HOXC4P09017 AC064836.3-201ENST00000607928 673 ntBASIC17.05■□□□□ 0.32
HOXC4P09017 AC010654.1-201ENST00000615722 808 ntBASIC17.05■□□□□ 0.32
HOXC4P09017 AC004790.2-201ENST00000623588 572 ntBASIC17.05■□□□□ 0.32
HOXC4P09017 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.05■□□□□ 0.32
HOXC4P09017 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXC4P09017 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HOXC4P09017 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 NOC2LP1-202ENST00000452600 2235 ntBASIC17.05■□□□□ 0.32
HOXC4P09017 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC4P09017 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXC4P09017 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.04■□□□□ 0.32
HOXC4P09017 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HOXC4P09017 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 HCG4B-203ENST00000450128 991 ntBASIC17.04■□□□□ 0.32
HOXC4P09017 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.04■□□□□ 0.32
HOXC4P09017 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXC4P09017 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXC4P09017 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 AC012317.2-201ENST00000623305 2251 ntBASIC17.04■□□□□ 0.32
HOXC4P09017 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXC4P09017 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.04■□□□□ 0.32
HOXC4P09017 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HOXC4P09017 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.04■□□□□ 0.32
HOXC4P09017 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.03■□□□□ 0.32
HOXC4P09017 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
HOXC4P09017 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.03■□□□□ 0.32
HOXC4P09017 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC4P09017 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.03■□□□□ 0.32
HOXC4P09017 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC4P09017 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC4P09017 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.03■□□□□ 0.32
HOXC4P09017 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC4P09017 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.03■□□□□ 0.32
HOXC4P09017 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.03■□□□□ 0.32
HOXC4P09017 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.03■□□□□ 0.32
HOXC4P09017 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC4P09017 AC006538.3-201ENST00000612495 578 ntBASIC17.03■□□□□ 0.32
HOXC4P09017 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms