Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.33■□□□□ 0.68
MMP3P08254 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
MMP3P08254 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.32■□□□□ 0.68
MMP3P08254 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 FAM58CP-201ENST00000435741 640 ntBASIC19.32■□□□□ 0.68
MMP3P08254 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.32■□□□□ 0.68
MMP3P08254 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.32■□□□□ 0.68
MMP3P08254 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.32■□□□□ 0.68
MMP3P08254 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
MMP3P08254 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
MMP3P08254 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.32■□□□□ 0.68
MMP3P08254 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.32■□□□□ 0.68
MMP3P08254 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.32■□□□□ 0.68
MMP3P08254 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MMP3P08254 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
MMP3P08254 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MMP3P08254 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.31■□□□□ 0.68
MMP3P08254 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.31■□□□□ 0.68
MMP3P08254 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.31■□□□□ 0.68
MMP3P08254 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.31■□□□□ 0.68
MMP3P08254 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.31■□□□□ 0.68
MMP3P08254 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
MMP3P08254 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.31■□□□□ 0.68
MMP3P08254 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
MMP3P08254 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
MMP3P08254 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MMP3P08254 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MMP3P08254 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
MMP3P08254 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
MMP3P08254 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
MMP3P08254 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
MMP3P08254 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.3■□□□□ 0.68
MMP3P08254 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
MMP3P08254 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.3■□□□□ 0.68
MMP3P08254 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.3■□□□□ 0.68
MMP3P08254 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.3■□□□□ 0.68
MMP3P08254 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
MMP3P08254 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
MMP3P08254 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.3■□□□□ 0.68
MMP3P08254 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.3■□□□□ 0.68
MMP3P08254 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.3■□□□□ 0.68
MMP3P08254 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.3■□□□□ 0.68
MMP3P08254 AL139327.4-201ENST00000612362 153 ntBASIC19.3■□□□□ 0.68
MMP3P08254 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.3■□□□□ 0.68
MMP3P08254 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.3■□□□□ 0.68
MMP3P08254 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MMP3P08254 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.29■□□□□ 0.68
MMP3P08254 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.29■□□□□ 0.68
MMP3P08254 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.29■□□□□ 0.68
MMP3P08254 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.29■□□□□ 0.68
MMP3P08254 PAWRP1-201ENST00000451083 565 ntBASIC19.29■□□□□ 0.68
MMP3P08254 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.29■□□□□ 0.68
MMP3P08254 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
MMP3P08254 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.29■□□□□ 0.68
MMP3P08254 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.29■□□□□ 0.68
MMP3P08254 AC091812.2-201ENST00000619081 385 ntBASIC19.29■□□□□ 0.68
MMP3P08254 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MMP3P08254 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
MMP3P08254 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.29■□□□□ 0.68
MMP3P08254 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms