Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 AC068880.1-201ENST00000507289 2297 ntBASIC18.51■□□□□ 0.55
RTN3O95197 AL049757.1-201ENST00000616842 1596 ntBASIC18.51■□□□□ 0.55
RTN3O95197 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.5■□□□□ 0.55
RTN3O95197 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.5■□□□□ 0.55
RTN3O95197 AC046158.3-201ENST00000624947 2558 ntBASIC18.5■□□□□ 0.55
RTN3O95197 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.5■□□□□ 0.55
RTN3O95197 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
RTN3O95197 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
RTN3O95197 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
RTN3O95197 AC093909.1-201ENST00000504731 1122 ntBASIC18.5■□□□□ 0.55
RTN3O95197 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.5■□□□□ 0.55
RTN3O95197 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.5■□□□□ 0.55
RTN3O95197 AC021087.4-201ENST00000563761 564 ntBASIC18.5■□□□□ 0.55
RTN3O95197 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.5■□□□□ 0.55
RTN3O95197 AC073592.4-201ENST00000623827 446 ntBASIC18.5■□□□□ 0.55
RTN3O95197 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
RTN3O95197 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.5■□□□□ 0.55
RTN3O95197 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.5■□□□□ 0.55
RTN3O95197 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.5■□□□□ 0.55
RTN3O95197 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.5■□□□□ 0.55
RTN3O95197 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
RTN3O95197 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
RTN3O95197 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
RTN3O95197 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RTN3O95197 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
RTN3O95197 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 SIGLEC16-201ENST00000599858 1437 ntBASIC18.49■□□□□ 0.55
RTN3O95197 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
RTN3O95197 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.49■□□□□ 0.55
RTN3O95197 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
RTN3O95197 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 AC079776.4-201ENST00000511039 504 ntBASIC18.49■□□□□ 0.55
RTN3O95197 IGHV3-52-201ENST00000519770 353 ntBASIC18.49■□□□□ 0.55
RTN3O95197 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
RTN3O95197 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.49■□□□□ 0.55
RTN3O95197 AC019129.2-201ENST00000609837 1235 ntBASIC18.49■□□□□ 0.55
RTN3O95197 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.55
RTN3O95197 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 AL354751.1-201ENST00000412768 1863 ntBASIC18.49■□□□□ 0.55
RTN3O95197 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.49■□□□□ 0.55
RTN3O95197 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.49■□□□□ 0.55
RTN3O95197 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
RTN3O95197 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RTN3O95197 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.48■□□□□ 0.55
RTN3O95197 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
RTN3O95197 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTN3O95197 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
RTN3O95197 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.48■□□□□ 0.55
RTN3O95197 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms