Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.68■□□□□ 0.74
MSH4O15457 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.68■□□□□ 0.74
MSH4O15457 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MSH4O15457 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.68■□□□□ 0.74
MSH4O15457 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.68■□□□□ 0.74
MSH4O15457 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.68■□□□□ 0.74
MSH4O15457 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.68■□□□□ 0.74
MSH4O15457 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MSH4O15457 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.68■□□□□ 0.74
MSH4O15457 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH4O15457 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
MSH4O15457 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
MSH4O15457 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.68■□□□□ 0.74
MSH4O15457 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.67■□□□□ 0.74
MSH4O15457 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
MSH4O15457 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.67■□□□□ 0.74
MSH4O15457 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
MSH4O15457 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.67■□□□□ 0.74
MSH4O15457 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.67■□□□□ 0.74
MSH4O15457 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.67■□□□□ 0.74
MSH4O15457 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.67■□□□□ 0.74
MSH4O15457 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.67■□□□□ 0.74
MSH4O15457 AC012640.2-201ENST00000561606 901 ntBASIC19.67■□□□□ 0.74
MSH4O15457 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.67■□□□□ 0.74
MSH4O15457 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.67■□□□□ 0.74
MSH4O15457 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
MSH4O15457 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.67■□□□□ 0.74
MSH4O15457 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
MSH4O15457 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MSH4O15457 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
MSH4O15457 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.67■□□□□ 0.74
MSH4O15457 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.66■□□□□ 0.74
MSH4O15457 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.66■□□□□ 0.74
MSH4O15457 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.66■□□□□ 0.74
MSH4O15457 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
MSH4O15457 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
MSH4O15457 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
MSH4O15457 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.66■□□□□ 0.74
MSH4O15457 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH4O15457 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH4O15457 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.66■□□□□ 0.74
MSH4O15457 AC079776.4-201ENST00000511039 504 ntBASIC19.66■□□□□ 0.74
MSH4O15457 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
MSH4O15457 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.66■□□□□ 0.74
MSH4O15457 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.66■□□□□ 0.74
MSH4O15457 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH4O15457 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.66■□□□□ 0.74
MSH4O15457 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH4O15457 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
MSH4O15457 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 AL135999.2-201ENST00000622438 1686 ntBASIC19.65■□□□□ 0.74
MSH4O15457 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
MSH4O15457 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.65■□□□□ 0.74
MSH4O15457 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.65■□□□□ 0.74
MSH4O15457 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MSH4O15457 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.65■□□□□ 0.74
MSH4O15457 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.65■□□□□ 0.74
MSH4O15457 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.65■□□□□ 0.74
MSH4O15457 LAGE3P1-201ENST00000425356 484 ntBASIC19.65■□□□□ 0.74
MSH4O15457 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.65■□□□□ 0.74
MSH4O15457 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.65■□□□□ 0.74
MSH4O15457 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
MSH4O15457 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.65■□□□□ 0.74
MSH4O15457 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
MSH4O15457 AL589182.2-201ENST00000619332 1049 ntBASIC19.65■□□□□ 0.74
MSH4O15457 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
MSH4O15457 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 AC243591.1-201ENST00000452967 1364 ntBASIC19.65■□□□□ 0.74
MSH4O15457 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
MSH4O15457 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH4O15457 AC097637.2-201ENST00000624096 1997 ntBASIC19.64■□□□□ 0.74
MSH4O15457 LINC00896-202ENST00000609602 2128 ntBASIC19.64■□□□□ 0.74
MSH4O15457 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSH4O15457 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSH4O15457 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.64■□□□□ 0.73
MSH4O15457 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.64■□□□□ 0.73
MSH4O15457 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
MSH4O15457 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms