Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.1■□□□□ 0.33
HDAC3O15379 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC3O15379 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC3O15379 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HDAC3O15379 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.1■□□□□ 0.33
HDAC3O15379 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
HDAC3O15379 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 MIR718-201ENST00000390190 70 ntBASIC17.1■□□□□ 0.33
HDAC3O15379 HMGA1P5-201ENST00000412453 271 ntBASIC17.1■□□□□ 0.33
HDAC3O15379 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.1■□□□□ 0.33
HDAC3O15379 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.1■□□□□ 0.33
HDAC3O15379 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.1■□□□□ 0.33
HDAC3O15379 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC3O15379 FAM87A-204ENST00000613235 858 ntBASIC17.1■□□□□ 0.33
HDAC3O15379 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.1■□□□□ 0.33
HDAC3O15379 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.1■□□□□ 0.33
HDAC3O15379 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HDAC3O15379 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDAC3O15379 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC3O15379 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC3O15379 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HDAC3O15379 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.09■□□□□ 0.33
HDAC3O15379 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.09■□□□□ 0.33
HDAC3O15379 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HDAC3O15379 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.09■□□□□ 0.33
HDAC3O15379 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.09■□□□□ 0.33
HDAC3O15379 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.09■□□□□ 0.33
HDAC3O15379 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.09■□□□□ 0.33
HDAC3O15379 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
HDAC3O15379 CYP2D8P-201ENST00000433633 1490 ntBASIC17.09■□□□□ 0.33
HDAC3O15379 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HDAC3O15379 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.09■□□□□ 0.33
HDAC3O15379 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.09■□□□□ 0.33
HDAC3O15379 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.09■□□□□ 0.33
HDAC3O15379 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC3O15379 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HDAC3O15379 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HDAC3O15379 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.08■□□□□ 0.33
HDAC3O15379 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HDAC3O15379 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.08■□□□□ 0.33
HDAC3O15379 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HDAC3O15379 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HDAC3O15379 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HDAC3O15379 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.08■□□□□ 0.32
HDAC3O15379 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.08■□□□□ 0.32
HDAC3O15379 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.08■□□□□ 0.32
HDAC3O15379 AC034232.1-201ENST00000506026 1064 ntBASIC17.08■□□□□ 0.32
HDAC3O15379 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.08■□□□□ 0.32
HDAC3O15379 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.08■□□□□ 0.32
HDAC3O15379 AL355075.4-201ENST00000554988 638 ntBASIC17.08■□□□□ 0.32
HDAC3O15379 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
HDAC3O15379 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
HDAC3O15379 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.08■□□□□ 0.32
HDAC3O15379 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 AC010947.1-201ENST00000623454 693 ntBASIC17.08■□□□□ 0.32
HDAC3O15379 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
HDAC3O15379 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 AL139384.1-201ENST00000612143 3047 ntBASIC17.08■□□□□ 0.32
HDAC3O15379 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC3O15379 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC3O15379 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HDAC3O15379 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms