Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 RPS2P28-201ENST00000314255 741 ntBASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 FAM220CP-201ENST00000395253 831 ntBASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 AL049840.3-201ENST00000602669 611 ntBASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
NPIPA2E9PIF3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
NPIPA2E9PIF3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 AC007967.3-201ENST00000434308 558 ntBASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 HNRNPDP1-201ENST00000439535 754 ntBASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 SLC25A1P1-201ENST00000528351 927 ntBASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 SART3-203ENST00000546611 1184 ntBASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 AC116407.2-201ENST00000613639 860 ntBASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 FAM215A-202ENST00000632077 792 ntBASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 AL356309.3-201ENST00000624132 1934 ntBASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NPIPA2E9PIF3 AC243591.1-201ENST00000452967 1364 ntBASIC16■□□□□ 0.15
NPIPA2E9PIF3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 KRT18P55-202ENST00000578578 1546 ntBASIC16■□□□□ 0.15
NPIPA2E9PIF3 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
NPIPA2E9PIF3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NPIPA2E9PIF3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms