Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 PAUPAR-201ENST00000630360 2965 ntBASIC15.32■□□□□ 0.04
SHISA3A0PJX4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SHISA3A0PJX4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.31■□□□□ 0.04
SHISA3A0PJX4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 SLC25A1P2-201ENST00000430693 912 ntBASIC15.31■□□□□ 0.04
SHISA3A0PJX4 KRT18P65-201ENST00000439811 1286 ntBASIC15.31■□□□□ 0.04
SHISA3A0PJX4 TSPY17P-201ENST00000450329 467 ntBASIC15.31■□□□□ 0.04
SHISA3A0PJX4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 AC008687.5-201ENST00000593746 558 ntBASIC15.31■□□□□ 0.04
SHISA3A0PJX4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 BX276092.7-203ENST00000637198 1536 ntBASIC15.31■□□□□ 0.04
SHISA3A0PJX4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.31■□□□□ 0.04
SHISA3A0PJX4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 AC113404.2-201ENST00000507884 177 ntBASIC15.3■□□□□ 0.04
SHISA3A0PJX4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 AC024243.1-201ENST00000609234 778 ntBASIC15.3■□□□□ 0.04
SHISA3A0PJX4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.3■□□□□ 0.04
SHISA3A0PJX4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHISA3A0PJX4 AL513523.2-202ENST00000427283 2040 ntBASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms