Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 GPALPP1-207ENST00000611650 899 ntBASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAIPQ9BWF2 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 AL049757.1-201ENST00000616842 1596 ntBASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 AC105339.3-201ENST00000560043 636 ntBASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 AC008764.6-201ENST00000595909 2069 ntBASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAIPQ9BWF2 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 AC098831.1-202ENST00000438821 336 ntBASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAIPQ9BWF2 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 KRT18P27-201ENST00000427733 1299 ntBASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms