Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP88Q99567 NOC2LP2-201ENST00000407594 1944 ntBASIC20.57■□□□□ 0.88
NUP88Q99567 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 AP002414.3-201ENST00000589352 1468 ntBASIC20.56■□□□□ 0.88
NUP88Q99567 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
NUP88Q99567 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.56■□□□□ 0.88
NUP88Q99567 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 PMS2P1-201ENST00000431037 1228 ntBASIC20.56■□□□□ 0.88
NUP88Q99567 IGHV3-22-201ENST00000520721 359 ntBASIC20.56■□□□□ 0.88
NUP88Q99567 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.56■□□□□ 0.88
NUP88Q99567 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.56■□□□□ 0.88
NUP88Q99567 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.56■□□□□ 0.88
NUP88Q99567 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
NUP88Q99567 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.56■□□□□ 0.88
NUP88Q99567 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.56■□□□□ 0.88
NUP88Q99567 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.56■□□□□ 0.88
NUP88Q99567 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP88Q99567 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.56■□□□□ 0.88
NUP88Q99567 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP88Q99567 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 RPS2P28-201ENST00000314255 741 ntBASIC20.55■□□□□ 0.88
NUP88Q99567 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP88Q99567 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP88Q99567 AC098831.1-202ENST00000438821 336 ntBASIC20.55■□□□□ 0.88
NUP88Q99567 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP88Q99567 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP88Q99567 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
NUP88Q99567 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP88Q99567 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NUP88Q99567 AC073592.5-201ENST00000624854 528 ntBASIC20.55■□□□□ 0.88
NUP88Q99567 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 HLA-J-201ENST00000462773 1622 ntBASIC20.55■□□□□ 0.88
NUP88Q99567 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 AC068880.1-201ENST00000507289 2297 ntBASIC20.55■□□□□ 0.88
NUP88Q99567 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP88Q99567 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.54■□□□□ 0.88
NUP88Q99567 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
NUP88Q99567 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
NUP88Q99567 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.54■□□□□ 0.88
NUP88Q99567 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
NUP88Q99567 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
NUP88Q99567 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.54■□□□□ 0.88
NUP88Q99567 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.54■□□□□ 0.88
NUP88Q99567 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.54■□□□□ 0.88
NUP88Q99567 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 AC008735.5-201ENST00000623544 497 ntBASIC20.54■□□□□ 0.88
NUP88Q99567 AC107918.4-202ENST00000641623 219 ntBASIC20.54■□□□□ 0.88
NUP88Q99567 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
NUP88Q99567 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.54■□□□□ 0.88
NUP88Q99567 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.54■□□□□ 0.88
NUP88Q99567 AL049757.1-201ENST00000616842 1596 ntBASIC20.54■□□□□ 0.88
NUP88Q99567 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.54■□□□□ 0.88
NUP88Q99567 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NUP88Q99567 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.53■□□□□ 0.88
NUP88Q99567 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.53■□□□□ 0.88
NUP88Q99567 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP88Q99567 AC104109.2-201ENST00000602919 1418 ntBASIC20.53■□□□□ 0.88
NUP88Q99567 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP88Q99567 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP88Q99567 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP88Q99567 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP88Q99567 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP88Q99567 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP88Q99567 SPDYE21P-201ENST00000413323 827 ntBASIC20.53■□□□□ 0.88
NUP88Q99567 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP88Q99567 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms