Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS35Q96QK1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS35Q96QK1 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS35Q96QK1 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 AC106795.1-205ENST00000512851 1056 ntBASIC17.46■□□□□ 0.39
VPS35Q96QK1 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
VPS35Q96QK1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS35Q96QK1 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS35Q96QK1 AL691432.3-201ENST00000621860 400 ntBASIC17.46■□□□□ 0.39
VPS35Q96QK1 AP000867.4-201ENST00000641616 219 ntBASIC17.46■□□□□ 0.39
VPS35Q96QK1 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS35Q96QK1 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS35Q96QK1 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS35Q96QK1 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS35Q96QK1 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS35Q96QK1 GNAS-203ENST00000306120 1878 ntBASIC17.46■□□□□ 0.38
VPS35Q96QK1 LINC00304-203ENST00000565008 1864 ntBASIC17.46■□□□□ 0.38
VPS35Q96QK1 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS35Q96QK1 SIRPAP1-201ENST00000448467 1770 ntBASIC17.45■□□□□ 0.38
VPS35Q96QK1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 PCDHB18P-201ENST00000524813 2368 ntBASIC17.45■□□□□ 0.38
VPS35Q96QK1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 RBM17P3-201ENST00000417687 1192 ntBASIC17.45■□□□□ 0.38
VPS35Q96QK1 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 SAPCD2P3-201ENST00000455031 850 ntBASIC17.45■□□□□ 0.38
VPS35Q96QK1 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS35Q96QK1 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 PMPCAP1-201ENST00000508114 1576 ntBASIC17.45■□□□□ 0.38
VPS35Q96QK1 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
VPS35Q96QK1 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 AKR1C7P-201ENST00000305623 895 ntBASIC17.44■□□□□ 0.38
VPS35Q96QK1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 MYCLP1-201ENST00000372451 1075 ntBASIC17.44■□□□□ 0.38
VPS35Q96QK1 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 IGHV3-52-201ENST00000519770 353 ntBASIC17.44■□□□□ 0.38
VPS35Q96QK1 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 AC109462.3-201ENST00000573934 613 ntBASIC17.44■□□□□ 0.38
VPS35Q96QK1 AP001269.4-201ENST00000609611 512 ntBASIC17.44■□□□□ 0.38
VPS35Q96QK1 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS35Q96QK1 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms