Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 TSPY12P-201ENST00000421279 868 ntBASIC18.98■□□□□ 0.63
CCDC42Q96M95 AC005104.2-201ENST00000427818 678 ntBASIC18.98■□□□□ 0.63
CCDC42Q96M95 RASA4DP-201ENST00000460726 1199 ntBASIC18.98■□□□□ 0.63
CCDC42Q96M95 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC42Q96M95 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC42Q96M95 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC42Q96M95 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.98■□□□□ 0.63
CCDC42Q96M95 AL136038.4-201ENST00000603606 1261 ntBASIC18.98■□□□□ 0.63
CCDC42Q96M95 TMEM191A-211ENST00000637163 1067 ntBASIC18.98■□□□□ 0.63
CCDC42Q96M95 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC42Q96M95 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 KRT18P22-201ENST00000402024 1347 ntBASIC18.98■□□□□ 0.63
CCDC42Q96M95 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC42Q96M95 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC42Q96M95 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 KRT18P48-201ENST00000434763 852 ntBASIC18.97■□□□□ 0.63
CCDC42Q96M95 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 AC079602.3-201ENST00000623931 403 ntBASIC18.97■□□□□ 0.63
CCDC42Q96M95 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC42Q96M95 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CCDC42Q96M95 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.96■□□□□ 0.63
CCDC42Q96M95 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 AC060834.1-201ENST00000443027 2032 ntBASIC18.96■□□□□ 0.63
CCDC42Q96M95 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC42Q96M95 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC42Q96M95 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.62
CCDC42Q96M95 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 LINC01311-201ENST00000565162 1445 ntBASIC18.95■□□□□ 0.62
CCDC42Q96M95 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 AC140113.3-201ENST00000605663 199 ntBASIC18.95■□□□□ 0.62
CCDC42Q96M95 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 AL138966.2-201ENST00000621997 464 ntBASIC18.95■□□□□ 0.62
CCDC42Q96M95 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
CCDC42Q96M95 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC42Q96M95 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms