Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.56■□□□□ 0.4
ECHDC3Q96DC8 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ECHDC3Q96DC8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ECHDC3Q96DC8 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ECHDC3Q96DC8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
ECHDC3Q96DC8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 HLA-A-201ENST00000376802 1334 ntBASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 LYSMD4-203ENST00000378904 2122 ntBASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ECHDC3Q96DC8 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 AC018470.1-201ENST00000624790 3129 ntBASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 AL133373.2-201ENST00000623187 2828 ntBASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 AL031284.1-201ENST00000419297 478 ntBASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 AC107918.4-202ENST00000641623 219 ntBASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 AC067852.2-201ENST00000590513 2313 ntBASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 AC046185.3-201ENST00000623228 1824 ntBASIC17.54■□□□□ 0.4
ECHDC3Q96DC8 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 LAGE3P1-201ENST00000425356 484 ntBASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 RPS2P1-201ENST00000434010 821 ntBASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 AL589182.2-201ENST00000619332 1049 ntBASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 FAM215A-202ENST00000632077 792 ntBASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
ECHDC3Q96DC8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms