Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 Z69720.1-201ENST00000601483 472 ntBASIC20.69■□□□□ 0.9
BRF1Q92994 AC092119.3-201ENST00000612618 583 ntBASIC20.69■□□□□ 0.9
BRF1Q92994 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.69■□□□□ 0.9
BRF1Q92994 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.69■□□□□ 0.9
BRF1Q92994 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
BRF1Q92994 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
BRF1Q92994 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
BRF1Q92994 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
BRF1Q92994 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
BRF1Q92994 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRF1Q92994 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRF1Q92994 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.69■□□□□ 0.9
BRF1Q92994 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRF1Q92994 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.68■□□□□ 0.9
BRF1Q92994 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.68■□□□□ 0.9
BRF1Q92994 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.68■□□□□ 0.9
BRF1Q92994 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
BRF1Q92994 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
BRF1Q92994 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.68■□□□□ 0.9
BRF1Q92994 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
BRF1Q92994 FAM220CP-201ENST00000395253 831 ntBASIC20.68■□□□□ 0.9
BRF1Q92994 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.68■□□□□ 0.9
BRF1Q92994 KRT17P6-201ENST00000453795 1220 ntBASIC20.68■□□□□ 0.9
BRF1Q92994 AC122714.2-201ENST00000502787 707 ntBASIC20.68■□□□□ 0.9
BRF1Q92994 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.68■□□□□ 0.9
BRF1Q92994 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
BRF1Q92994 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.68■□□□□ 0.9
BRF1Q92994 AL139327.4-201ENST00000612362 153 ntBASIC20.68■□□□□ 0.9
BRF1Q92994 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.68■□□□□ 0.9
BRF1Q92994 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.68■□□□□ 0.9
BRF1Q92994 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.68■□□□□ 0.9
BRF1Q92994 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.68■□□□□ 0.9
BRF1Q92994 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
BRF1Q92994 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.68■□□□□ 0.9
BRF1Q92994 NSUN5P1-202ENST00000421140 1535 ntBASIC20.68■□□□□ 0.9
BRF1Q92994 NSUN5P2-203ENST00000457352 1529 ntBASIC20.68■□□□□ 0.9
BRF1Q92994 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
BRF1Q92994 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
BRF1Q92994 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.67■□□□□ 0.9
BRF1Q92994 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
BRF1Q92994 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
BRF1Q92994 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.67■□□□□ 0.9
BRF1Q92994 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.67■□□□□ 0.9
BRF1Q92994 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.67■□□□□ 0.9
BRF1Q92994 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.67■□□□□ 0.9
BRF1Q92994 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 IGHV3-47-201ENST00000425060 335 ntBASIC20.67■□□□□ 0.9
BRF1Q92994 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.67■□□□□ 0.9
BRF1Q92994 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.67■□□□□ 0.9
BRF1Q92994 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.67■□□□□ 0.9
BRF1Q92994 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
BRF1Q92994 AC009533.2-201ENST00000543664 586 ntBASIC20.67■□□□□ 0.9
BRF1Q92994 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.67■□□□□ 0.9
BRF1Q92994 BNIP3P18-201ENST00000593976 575 ntBASIC20.67■□□□□ 0.9
BRF1Q92994 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.67■□□□□ 0.9
BRF1Q92994 AC093458.2-201ENST00000623150 629 ntBASIC20.67■□□□□ 0.9
BRF1Q92994 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
BRF1Q92994 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.67■□□□□ 0.9
BRF1Q92994 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
BRF1Q92994 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 TP73-AS1-210ENST00000637775 1455 ntBASIC20.67■□□□□ 0.9
BRF1Q92994 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
BRF1Q92994 AL049757.1-201ENST00000616842 1596 ntBASIC20.67■□□□□ 0.9
BRF1Q92994 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.66■□□□□ 0.9
BRF1Q92994 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
BRF1Q92994 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.66■□□□□ 0.9
BRF1Q92994 ATP5G2P1-201ENST00000433580 426 ntBASIC20.66■□□□□ 0.9
BRF1Q92994 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms