Protein–RNA interactions for Protein: Q8IWZ4

TRIM48, Tripartite motif-containing protein 48, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48Q8IWZ4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM48Q8IWZ4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 ABCD1P5-201ENST00000445663 754 ntBASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 AC009078.2-202ENST00000463353 338 ntBASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 AL662844.1-201ENST00000546340 181 ntBASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 AC104692.2-201ENST00000603054 253 ntBASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 AP001269.4-201ENST00000609611 512 ntBASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 AL355877.3-201ENST00000622820 899 ntBASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRIM48Q8IWZ4 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 AC010460.3-201ENST00000511359 1579 ntBASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRIM48Q8IWZ4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 FAM197Y8-203ENST00000450145 560 ntBASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 AF186996.4-201ENST00000467186 377 ntBASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 FLJ13224-201ENST00000313737 1514 ntBASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM48Q8IWZ4 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TRIM48Q8IWZ4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms