Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF111Q6ZNA4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF111Q6ZNA4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF111Q6ZNA4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.11■□□□□ 0.33
RNF111Q6ZNA4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 NTF6B-201ENST00000591913 560 ntBASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF111Q6ZNA4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 PVRIG2P-201ENST00000435460 978 ntBASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 AC010331.1-201ENST00000611423 582 ntBASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF111Q6ZNA4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
RNF111Q6ZNA4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 AL671277.2-201ENST00000458060 996 ntBASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RNF111Q6ZNA4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms