Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 FAM220CP-201ENST00000395253 831 ntBASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 LTB4R2-202ENST00000528054 3092 ntBASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE3Q6ZMZ3 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 IGHV3-47-201ENST00000425060 335 ntBASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 HCG4P8-203ENST00000443049 980 ntBASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE3Q6ZMZ3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 AC133963.1-201ENST00000504166 1679 ntBASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
SYNE3Q6ZMZ3 TP73-AS1-210ENST00000637775 1455 ntBASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 REXO1L11P-201ENST00000620964 1927 ntBASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 HLA-J-201ENST00000462773 1622 ntBASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 POM121L3P-201ENST00000419331 1163 ntBASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 AC122714.2-201ENST00000502787 707 ntBASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 AC096582.2-201ENST00000510860 516 ntBASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms