Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.37■□□□□ 0.69
PEX3P56589 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PEX3P56589 FGFR3P6-201ENST00000457012 610 ntBASIC19.37■□□□□ 0.69
PEX3P56589 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
PEX3P56589 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PEX3P56589 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.37■□□□□ 0.69
PEX3P56589 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.37■□□□□ 0.69
PEX3P56589 AL121912.1-201ENST00000603683 238 ntBASIC19.37■□□□□ 0.69
PEX3P56589 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.37■□□□□ 0.69
PEX3P56589 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PEX3P56589 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.37■□□□□ 0.69
PEX3P56589 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.37■□□□□ 0.69
PEX3P56589 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
PEX3P56589 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PEX3P56589 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.37■□□□□ 0.69
PEX3P56589 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PEX3P56589 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PEX3P56589 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.36■□□□□ 0.69
PEX3P56589 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
PEX3P56589 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.36■□□□□ 0.69
PEX3P56589 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.36■□□□□ 0.69
PEX3P56589 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PEX3P56589 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
PEX3P56589 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
PEX3P56589 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
PEX3P56589 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.36■□□□□ 0.69
PEX3P56589 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.36■□□□□ 0.69
PEX3P56589 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
PEX3P56589 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.36■□□□□ 0.69
PEX3P56589 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PEX3P56589 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PEX3P56589 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.35■□□□□ 0.69
PEX3P56589 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.35■□□□□ 0.69
PEX3P56589 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.35■□□□□ 0.69
PEX3P56589 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.35■□□□□ 0.69
PEX3P56589 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
PEX3P56589 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.35■□□□□ 0.69
PEX3P56589 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.35■□□□□ 0.69
PEX3P56589 STK25P1-201ENST00000585406 838 ntBASIC19.35■□□□□ 0.69
PEX3P56589 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.35■□□□□ 0.69
PEX3P56589 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.35■□□□□ 0.69
PEX3P56589 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.35■□□□□ 0.69
PEX3P56589 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
PEX3P56589 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.35■□□□□ 0.69
PEX3P56589 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
PEX3P56589 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
PEX3P56589 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PEX3P56589 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.35■□□□□ 0.69
PEX3P56589 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.34■□□□□ 0.69
PEX3P56589 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
PEX3P56589 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.34■□□□□ 0.69
PEX3P56589 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.34■□□□□ 0.69
PEX3P56589 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 KLF4P1-201ENST00000412782 1185 ntBASIC19.34■□□□□ 0.69
PEX3P56589 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.34■□□□□ 0.69
PEX3P56589 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.34■□□□□ 0.69
PEX3P56589 AC104692.2-201ENST00000603054 253 ntBASIC19.34■□□□□ 0.69
PEX3P56589 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.34■□□□□ 0.69
PEX3P56589 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PEX3P56589 TP73-AS1-207ENST00000624167 988 ntBASIC19.34■□□□□ 0.69
PEX3P56589 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
PEX3P56589 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.34■□□□□ 0.69
PEX3P56589 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PEX3P56589 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PEX3P56589 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PEX3P56589 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms