Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC13.25□□□□□ -0.29
FOXA3P55318 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
FOXA3P55318 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC13.25□□□□□ -0.29
FOXA3P55318 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
FOXA3P55318 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.24□□□□□ -0.29
FOXA3P55318 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 PCDHB17P-201ENST00000539533 2393 ntBASIC13.24□□□□□ -0.29
FOXA3P55318 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
FOXA3P55318 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
FOXA3P55318 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 SLC29A4P1-201ENST00000398760 971 ntBASIC13.24□□□□□ -0.29
FOXA3P55318 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 NIFKP9-201ENST00000419265 221 ntBASIC13.24□□□□□ -0.29
FOXA3P55318 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC13.24□□□□□ -0.29
FOXA3P55318 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC13.24□□□□□ -0.29
FOXA3P55318 IKBKGP1-201ENST00000612193 1073 ntBASIC13.24□□□□□ -0.29
FOXA3P55318 AC130371.2-201ENST00000619443 611 ntBASIC13.24□□□□□ -0.29
FOXA3P55318 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
FOXA3P55318 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 GPAT2P1-201ENST00000444924 1672 ntBASIC13.24□□□□□ -0.29
FOXA3P55318 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
FOXA3P55318 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA3P55318 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
FOXA3P55318 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
FOXA3P55318 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.24□□□□□ -0.29
FOXA3P55318 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA3P55318 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.29
FOXA3P55318 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA3P55318 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA3P55318 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA3P55318 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA3P55318 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
FOXA3P55318 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA3P55318 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms