Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HTTP42858 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
HTTP42858 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HTTP42858 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
HTTP42858 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HTTP42858 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HTTP42858 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
HTTP42858 CLDN5-201ENST00000403084 2357 ntBASIC19.56■□□□□ 0.72
HTTP42858 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
HTTP42858 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
HTTP42858 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HTTP42858 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HTTP42858 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
HTTP42858 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
HTTP42858 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HTTP42858 AC005237.2-201ENST00000434368 219 ntBASIC19.56■□□□□ 0.72
HTTP42858 FAM86C2P-203ENST00000528684 1004 ntBASIC19.56■□□□□ 0.72
HTTP42858 AC107918.2-201ENST00000530817 355 ntBASIC19.56■□□□□ 0.72
HTTP42858 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC19.56■□□□□ 0.72
HTTP42858 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HTTP42858 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
HTTP42858 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
HTTP42858 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
HTTP42858 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.55■□□□□ 0.72
HTTP42858 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC19.55■□□□□ 0.72
HTTP42858 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC19.55■□□□□ 0.72
HTTP42858 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.55■□□□□ 0.72
HTTP42858 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 AC022144.1-201ENST00000602255 1580 ntBASIC19.55■□□□□ 0.72
HTTP42858 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.55■□□□□ 0.72
HTTP42858 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.55■□□□□ 0.72
HTTP42858 AC026150.2-201ENST00000564693 1156 ntBASIC19.55■□□□□ 0.72
HTTP42858 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
HTTP42858 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
HTTP42858 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HTTP42858 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HTTP42858 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 AL590787.1-201ENST00000568856 1315 ntBASIC19.54■□□□□ 0.72
HTTP42858 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC19.54■□□□□ 0.72
HTTP42858 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.54■□□□□ 0.72
HTTP42858 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC19.54■□□□□ 0.72
HTTP42858 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.54■□□□□ 0.72
HTTP42858 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC19.54■□□□□ 0.72
HTTP42858 SPTSSB-204ENST00000617024 1292 ntBASIC19.54■□□□□ 0.72
HTTP42858 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
HTTP42858 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.54■□□□□ 0.72
HTTP42858 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.54■□□□□ 0.72
HTTP42858 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 AC093010.1-201ENST00000473625 1624 ntBASIC19.54■□□□□ 0.72
HTTP42858 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HTTP42858 RBPMS2P1-201ENST00000437762 623 ntBASIC19.54■□□□□ 0.72
HTTP42858 ACA64.2-201ENST00000459014 129 ntBASIC19.54■□□□□ 0.72
HTTP42858 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.54■□□□□ 0.72
HTTP42858 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.53■□□□□ 0.72
HTTP42858 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.53■□□□□ 0.72
HTTP42858 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.53■□□□□ 0.72
HTTP42858 AL096828.2-201ENST00000567259 1965 ntBASIC19.53■□□□□ 0.72
HTTP42858 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.53■□□□□ 0.72
HTTP42858 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
HTTP42858 SLC25A6P2-201ENST00000497974 877 ntBASIC19.53■□□□□ 0.72
HTTP42858 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC19.53■□□□□ 0.72
HTTP42858 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HTTP42858 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
HTTP42858 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HTTP42858 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
HTTP42858 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
HTTP42858 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms