Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.36■□□□□ 0.85
COL2A1P02458 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
COL2A1P02458 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
COL2A1P02458 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL2A1P02458 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC20.36■□□□□ 0.85
COL2A1P02458 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.36■□□□□ 0.85
COL2A1P02458 AL513210.1-201ENST00000629608 234 ntBASIC20.36■□□□□ 0.85
COL2A1P02458 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL2A1P02458 KRT18P28-201ENST00000453838 1332 ntBASIC20.35■□□□□ 0.85
COL2A1P02458 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20.35■□□□□ 0.85
COL2A1P02458 LYSMD4-203ENST00000378904 2122 ntBASIC20.35■□□□□ 0.85
COL2A1P02458 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.35■□□□□ 0.85
COL2A1P02458 AC004408.2-201ENST00000623613 2777 ntBASIC20.35■□□□□ 0.85
COL2A1P02458 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.35■□□□□ 0.85
COL2A1P02458 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20.35■□□□□ 0.85
COL2A1P02458 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC20.35■□□□□ 0.85
COL2A1P02458 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 RFPL4AP1-201ENST00000530883 850 ntBASIC20.35■□□□□ 0.85
COL2A1P02458 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.35■□□□□ 0.85
COL2A1P02458 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.35■□□□□ 0.85
COL2A1P02458 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.35■□□□□ 0.85
COL2A1P02458 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL2A1P02458 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.35■□□□□ 0.85
COL2A1P02458 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.35■□□□□ 0.85
COL2A1P02458 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.34■□□□□ 0.85
COL2A1P02458 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL2A1P02458 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL2A1P02458 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC20.34■□□□□ 0.85
COL2A1P02458 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC20.34■□□□□ 0.85
COL2A1P02458 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.34■□□□□ 0.85
COL2A1P02458 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.34■□□□□ 0.85
COL2A1P02458 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.34■□□□□ 0.85
COL2A1P02458 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL2A1P02458 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL2A1P02458 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL2A1P02458 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL2A1P02458 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL2A1P02458 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COL2A1P02458 AP002472.1-201ENST00000577490 586 ntBASIC20.33■□□□□ 0.85
COL2A1P02458 MIR3197-201ENST00000582241 73 ntBASIC20.33■□□□□ 0.85
COL2A1P02458 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.33■□□□□ 0.85
COL2A1P02458 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL2A1P02458 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL2A1P02458 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.33■□□□□ 0.84
COL2A1P02458 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL2A1P02458 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.33■□□□□ 0.84
COL2A1P02458 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
COL2A1P02458 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL2A1P02458 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.33■□□□□ 0.84
COL2A1P02458 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL2A1P02458 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.33■□□□□ 0.84
COL2A1P02458 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
COL2A1P02458 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
COL2A1P02458 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL2A1P02458 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL2A1P02458 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.32■□□□□ 0.84
COL2A1P02458 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
COL2A1P02458 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
COL2A1P02458 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.32■□□□□ 0.84
COL2A1P02458 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC20.32■□□□□ 0.84
COL2A1P02458 AL513480.1-201ENST00000451731 511 ntBASIC20.32■□□□□ 0.84
COL2A1P02458 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.32■□□□□ 0.84
COL2A1P02458 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.32■□□□□ 0.84
COL2A1P02458 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.32■□□□□ 0.84
COL2A1P02458 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL2A1P02458 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.32■□□□□ 0.84
COL2A1P02458 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms