Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CLPTM1O96005 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CLPTM1O96005 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CLPTM1O96005 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.66■□□□□ 0.26
CLPTM1O96005 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CLPTM1O96005 AC022188.1-201ENST00000620960 1664 ntBASIC16.65■□□□□ 0.26
CLPTM1O96005 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
CLPTM1O96005 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CLPTM1O96005 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 AL136379.1-201ENST00000623471 2642 ntBASIC16.65■□□□□ 0.26
CLPTM1O96005 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
CLPTM1O96005 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CLPTM1O96005 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.65■□□□□ 0.26
CLPTM1O96005 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.65■□□□□ 0.26
CLPTM1O96005 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.65■□□□□ 0.26
CLPTM1O96005 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.65■□□□□ 0.26
CLPTM1O96005 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.65■□□□□ 0.26
CLPTM1O96005 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.65■□□□□ 0.26
CLPTM1O96005 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.65■□□□□ 0.26
CLPTM1O96005 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CLPTM1O96005 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLPTM1O96005 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
CLPTM1O96005 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
CLPTM1O96005 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
CLPTM1O96005 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 KRT16P1-201ENST00000399124 1418 ntBASIC16.64■□□□□ 0.25
CLPTM1O96005 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CLPTM1O96005 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.64■□□□□ 0.25
CLPTM1O96005 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.64■□□□□ 0.25
CLPTM1O96005 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.64■□□□□ 0.25
CLPTM1O96005 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CLPTM1O96005 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.64■□□□□ 0.25
CLPTM1O96005 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
CLPTM1O96005 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.64■□□□□ 0.25
CLPTM1O96005 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.64■□□□□ 0.25
CLPTM1O96005 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CLPTM1O96005 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.64■□□□□ 0.25
CLPTM1O96005 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLPTM1O96005 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.63■□□□□ 0.25
CLPTM1O96005 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 AC006449.5-201ENST00000610658 2098 ntBASIC16.63■□□□□ 0.25
CLPTM1O96005 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
CLPTM1O96005 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.63■□□□□ 0.25
CLPTM1O96005 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CLPTM1O96005 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CLPTM1O96005 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.63■□□□□ 0.25
CLPTM1O96005 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.63■□□□□ 0.25
CLPTM1O96005 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
CLPTM1O96005 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.63■□□□□ 0.25
CLPTM1O96005 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CLPTM1O96005 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms