Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TSPY18P-201ENST00000441642 509 ntBASIC16.55■□□□□ 0.24
LDB3O75112 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.55■□□□□ 0.24
LDB3O75112 AC091304.2-201ENST00000564639 760 ntBASIC16.55■□□□□ 0.24
LDB3O75112 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.55■□□□□ 0.24
LDB3O75112 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.55■□□□□ 0.24
LDB3O75112 AC019129.2-201ENST00000609837 1235 ntBASIC16.55■□□□□ 0.24
LDB3O75112 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
LDB3O75112 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.55■□□□□ 0.24
LDB3O75112 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LDB3O75112 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.55■□□□□ 0.24
LDB3O75112 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.54■□□□□ 0.24
LDB3O75112 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
LDB3O75112 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.54■□□□□ 0.24
LDB3O75112 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.54■□□□□ 0.24
LDB3O75112 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LDB3O75112 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.54■□□□□ 0.24
LDB3O75112 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.54■□□□□ 0.24
LDB3O75112 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LDB3O75112 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 AC005104.2-201ENST00000427818 678 ntBASIC16.54■□□□□ 0.24
LDB3O75112 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.54■□□□□ 0.24
LDB3O75112 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.54■□□□□ 0.24
LDB3O75112 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.54■□□□□ 0.24
LDB3O75112 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LDB3O75112 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.54■□□□□ 0.24
LDB3O75112 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.54■□□□□ 0.24
LDB3O75112 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 AL049757.1-201ENST00000616842 1596 ntBASIC16.54■□□□□ 0.24
LDB3O75112 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.54■□□□□ 0.24
LDB3O75112 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LDB3O75112 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDB3O75112 KRT8P10-201ENST00000450021 1447 ntBASIC16.53■□□□□ 0.24
LDB3O75112 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.53■□□□□ 0.24
LDB3O75112 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LDB3O75112 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.53■□□□□ 0.24
LDB3O75112 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.53■□□□□ 0.24
LDB3O75112 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.53■□□□□ 0.24
LDB3O75112 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.53■□□□□ 0.24
LDB3O75112 AC132008.2-207ENST00000454517 770 ntBASIC16.53■□□□□ 0.24
LDB3O75112 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.53■□□□□ 0.24
LDB3O75112 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.53■□□□□ 0.24
LDB3O75112 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.53■□□□□ 0.24
LDB3O75112 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.53■□□□□ 0.24
LDB3O75112 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.53■□□□□ 0.24
LDB3O75112 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.53■□□□□ 0.24
LDB3O75112 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.53■□□□□ 0.24
LDB3O75112 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDB3O75112 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
LDB3O75112 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.52■□□□□ 0.24
LDB3O75112 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.52■□□□□ 0.24
LDB3O75112 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB3O75112 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms