Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
SDC3O75056 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC3O75056 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SDC3O75056 AC211486.1-202ENST00000416371 468 ntBASIC17.16■□□□□ 0.34
SDC3O75056 PMS2P2-201ENST00000425039 1128 ntBASIC17.16■□□□□ 0.34
SDC3O75056 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.16■□□□□ 0.34
SDC3O75056 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC3O75056 RPS15P9-201ENST00000494093 319 ntBASIC17.16■□□□□ 0.34
SDC3O75056 AC211476.1-201ENST00000503899 468 ntBASIC17.16■□□□□ 0.34
SDC3O75056 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.16■□□□□ 0.34
SDC3O75056 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC3O75056 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC3O75056 AL596442.2-201ENST00000610240 980 ntBASIC17.16■□□□□ 0.34
SDC3O75056 AC092865.6-201ENST00000642101 219 ntBASIC17.16■□□□□ 0.34
SDC3O75056 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC3O75056 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC3O75056 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC3O75056 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.15■□□□□ 0.34
SDC3O75056 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SDC3O75056 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.15■□□□□ 0.34
SDC3O75056 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.15■□□□□ 0.34
SDC3O75056 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
SDC3O75056 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.15■□□□□ 0.34
SDC3O75056 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC3O75056 AC004790.2-201ENST00000623588 572 ntBASIC17.15■□□□□ 0.34
SDC3O75056 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC3O75056 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC3O75056 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.14■□□□□ 0.34
SDC3O75056 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SDC3O75056 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.14■□□□□ 0.33
SDC3O75056 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
SDC3O75056 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC3O75056 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.14■□□□□ 0.33
SDC3O75056 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.14■□□□□ 0.33
SDC3O75056 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.14■□□□□ 0.33
SDC3O75056 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.14■□□□□ 0.33
SDC3O75056 ALG1L5P-201ENST00000482043 771 ntBASIC17.14■□□□□ 0.33
SDC3O75056 STK19B-204ENST00000512515 211 ntBASIC17.14■□□□□ 0.33
SDC3O75056 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC3O75056 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.14■□□□□ 0.33
SDC3O75056 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.14■□□□□ 0.33
SDC3O75056 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC3O75056 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.14■□□□□ 0.33
SDC3O75056 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
SDC3O75056 AC116407.2-201ENST00000613639 860 ntBASIC17.14■□□□□ 0.33
SDC3O75056 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
SDC3O75056 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
SDC3O75056 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC3O75056 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC3O75056 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC3O75056 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SDC3O75056 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SDC3O75056 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 NEFHP1-201ENST00000412845 2629 ntBASIC17.13■□□□□ 0.33
SDC3O75056 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SDC3O75056 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms