Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MSH4O15457 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
MSH4O15457 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.71■□□□□ 0.75
MSH4O15457 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.71■□□□□ 0.75
MSH4O15457 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
MSH4O15457 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MSH4O15457 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
MSH4O15457 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.71■□□□□ 0.75
MSH4O15457 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.71■□□□□ 0.75
MSH4O15457 SIGLEC30P-201ENST00000455569 941 ntBASIC19.71■□□□□ 0.75
MSH4O15457 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.71■□□□□ 0.75
MSH4O15457 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
MSH4O15457 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
MSH4O15457 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.71■□□□□ 0.75
MSH4O15457 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.71■□□□□ 0.75
MSH4O15457 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.71■□□□□ 0.74
MSH4O15457 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
MSH4O15457 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
MSH4O15457 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
MSH4O15457 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
MSH4O15457 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.7■□□□□ 0.74
MSH4O15457 AC046185.3-201ENST00000623228 1824 ntBASIC19.7■□□□□ 0.74
MSH4O15457 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.7■□□□□ 0.74
MSH4O15457 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.7■□□□□ 0.74
MSH4O15457 FAM215A-202ENST00000632077 792 ntBASIC19.7■□□□□ 0.74
MSH4O15457 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
MSH4O15457 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.7■□□□□ 0.74
MSH4O15457 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH4O15457 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH4O15457 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
MSH4O15457 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
MSH4O15457 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH4O15457 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
MSH4O15457 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
MSH4O15457 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.69■□□□□ 0.74
MSH4O15457 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.69■□□□□ 0.74
MSH4O15457 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH4O15457 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.69■□□□□ 0.74
MSH4O15457 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.69■□□□□ 0.74
MSH4O15457 OR7E14P-202ENST00000530490 1290 ntBASIC19.69■□□□□ 0.74
MSH4O15457 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH4O15457 AP001005.1-201ENST00000571755 1248 ntBASIC19.69■□□□□ 0.74
MSH4O15457 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.69■□□□□ 0.74
MSH4O15457 MIR7706-201ENST00000613747 67 ntBASIC19.69■□□□□ 0.74
MSH4O15457 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.69■□□□□ 0.74
MSH4O15457 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.69■□□□□ 0.74
MSH4O15457 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH4O15457 AC107918.4-202ENST00000641623 219 ntBASIC19.69■□□□□ 0.74
MSH4O15457 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
MSH4O15457 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.69■□□□□ 0.74
MSH4O15457 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
MSH4O15457 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
MSH4O15457 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.69■□□□□ 0.74
MSH4O15457 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH4O15457 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH4O15457 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.68■□□□□ 0.74
MSH4O15457 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH4O15457 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH4O15457 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH4O15457 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms