Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PDLIM1O00151 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 AC211429.1-201ENST00000415277 523 ntBASIC16.8■□□□□ 0.28
PDLIM1O00151 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.8■□□□□ 0.28
PDLIM1O00151 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.8■□□□□ 0.28
PDLIM1O00151 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.8■□□□□ 0.28
PDLIM1O00151 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 AC008622.2-201ENST00000617006 1229 ntBASIC16.8■□□□□ 0.28
PDLIM1O00151 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 AC022188.1-201ENST00000620960 1664 ntBASIC16.8■□□□□ 0.28
PDLIM1O00151 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.8■□□□□ 0.28
PDLIM1O00151 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.8■□□□□ 0.28
PDLIM1O00151 LINC02228-204ENST00000642115 2962 ntBASIC16.8■□□□□ 0.28
PDLIM1O00151 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PDLIM1O00151 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.8■□□□□ 0.28
PDLIM1O00151 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.79■□□□□ 0.28
PDLIM1O00151 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 AC034236.2-201ENST00000606662 1610 ntBASIC16.79■□□□□ 0.28
PDLIM1O00151 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PDLIM1O00151 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PDLIM1O00151 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.79■□□□□ 0.28
PDLIM1O00151 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.79■□□□□ 0.28
PDLIM1O00151 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.79■□□□□ 0.28
PDLIM1O00151 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PDLIM1O00151 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PDLIM1O00151 AC100803.2-201ENST00000562459 1963 ntBASIC16.78■□□□□ 0.28
PDLIM1O00151 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
PDLIM1O00151 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.78■□□□□ 0.28
PDLIM1O00151 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.78■□□□□ 0.28
PDLIM1O00151 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 TSPY14P-201ENST00000303979 915 ntBASIC16.78■□□□□ 0.28
PDLIM1O00151 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.78■□□□□ 0.28
PDLIM1O00151 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.78■□□□□ 0.28
PDLIM1O00151 NAPSB-206ENST00000562112 1266 ntBASIC16.78■□□□□ 0.28
PDLIM1O00151 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.78■□□□□ 0.28
PDLIM1O00151 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
PDLIM1O00151 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 AC145285.6-201ENST00000604632 637 ntBASIC16.78■□□□□ 0.28
PDLIM1O00151 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
PDLIM1O00151 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.78■□□□□ 0.28
PDLIM1O00151 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PDLIM1O00151 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.78■□□□□ 0.28
PDLIM1O00151 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PDLIM1O00151 AC009102.3-201ENST00000623118 1491 ntBASIC16.78■□□□□ 0.28
PDLIM1O00151 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PDLIM1O00151 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.78■□□□□ 0.28
PDLIM1O00151 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM1O00151 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM1O00151 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PDLIM1O00151 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM1O00151 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM1O00151 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM1O00151 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM1O00151 AL163051.1-201ENST00000569214 1512 ntBASIC16.77■□□□□ 0.28
PDLIM1O00151 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms