Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC188H7C350 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC188H7C350 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC188H7C350 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC188H7C350 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC188H7C350 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC188H7C350 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC188H7C350 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC188H7C350 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC188H7C350 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC188H7C350 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC188H7C350 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC188H7C350 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC188H7C350 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC188H7C350 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC188H7C350 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 INGX-201ENST00000359239 846 ntBASIC18.29■□□□□ 0.52
CCDC188H7C350 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.29■□□□□ 0.52
CCDC188H7C350 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
CCDC188H7C350 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC188H7C350 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC188H7C350 Z99916.2-201ENST00000604037 246 ntBASIC18.29■□□□□ 0.52
CCDC188H7C350 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.29■□□□□ 0.52
CCDC188H7C350 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC188H7C350 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC188H7C350 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC188H7C350 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC188H7C350 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC188H7C350 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC188H7C350 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC188H7C350 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC188H7C350 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.28■□□□□ 0.52
CCDC188H7C350 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC188H7C350 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC188H7C350 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 DOC2GP-204ENST00000639052 2548 ntBASIC18.28■□□□□ 0.52
CCDC188H7C350 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.28■□□□□ 0.52
CCDC188H7C350 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CCDC188H7C350 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC188H7C350 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC188H7C350 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC188H7C350 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC188H7C350 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CCDC188H7C350 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC188H7C350 SLC25A1P3-201ENST00000395415 828 ntBASIC18.27■□□□□ 0.52
CCDC188H7C350 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC188H7C350 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC188H7C350 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC188H7C350 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
CCDC188H7C350 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC188H7C350 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
CCDC188H7C350 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC188H7C350 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CCDC188H7C350 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC188H7C350 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC188H7C350 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.27■□□□□ 0.51
CCDC188H7C350 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.27■□□□□ 0.51
CCDC188H7C350 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC188H7C350 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC188H7C350 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC188H7C350 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC188H7C350 AC093525.9-201ENST00000624961 1746 ntBASIC18.26■□□□□ 0.51
CCDC188H7C350 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC188H7C350 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC188H7C350 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC188H7C350 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms