Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 AC034232.1-201ENST00000506026 1064 ntBASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 AC112698.1-201ENST00000510299 916 ntBASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 AC009154.2-201ENST00000621177 724 ntBASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 LINC01311-201ENST00000565162 1445 ntBASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 CROCCP1-201ENST00000426910 5675 ntBASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 AC079602.3-201ENST00000623931 403 ntBASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 AC141257.4-201ENST00000634557 245 ntBASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 AC136944.6-201ENST00000634818 245 ntBASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 AC116353.5-201ENST00000638148 1699 ntBASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 PCDHA14-201ENST00000506751 2298 ntBASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM49D1C9J1S8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 AL391807.1-203ENST00000604392 2365 ntBASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 AC105020.1-201ENST00000435356 2205 ntBASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 TSPY12P-201ENST00000421279 868 ntBASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM49D1C9J1S8 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM49D1C9J1S8 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TRIM49D1C9J1S8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM49D1C9J1S8 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM49D1C9J1S8 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM49D1C9J1S8 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms