Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 HLA-DQB1-201ENST00000374943 1656 ntBASIC30.15■■■□□ 2.42
CCDC88BA6NC98 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 FAM86GP-201ENST00000448322 971 ntBASIC30.14■■■□□ 2.42
CCDC88BA6NC98 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 AQP6-203ENST00000551733 849 ntTSL 3 BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 PRR29-209ENST00000582540 967 ntTSL 2 BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
CCDC88BA6NC98 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
CCDC88BA6NC98 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 DUX4L27-201ENST00000554796 1261 ntBASIC30.13■■■□□ 2.41
CCDC88BA6NC98 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
CCDC88BA6NC98 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 MIR661-201ENST00000384842 89 ntBASIC30.12■■■□□ 2.41
CCDC88BA6NC98 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 AC069335.1-201ENST00000489972 472 ntBASIC30.12■■■□□ 2.41
CCDC88BA6NC98 AC079140.1-201ENST00000508039 487 ntBASIC30.12■■■□□ 2.41
CCDC88BA6NC98 GATB-205ENST00000508611 605 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 AC243562.1-201ENST00000560672 389 ntBASIC30.12■■■□□ 2.41
CCDC88BA6NC98 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 BSG-215ENST00000618006 1329 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 AL135744.1-201ENST00000565098 629 ntBASIC30.12■■■□□ 2.41
CCDC88BA6NC98 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC88BA6NC98 AJ011932.1-201ENST00000621707 465 ntBASIC30.12■■■□□ 2.41
CCDC88BA6NC98 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 VPS29-207ENST00000549970 818 ntTSL 3 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 DUT-210ENST00000559935 569 ntTSL 3 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 AC138761.1-201ENST00000584393 385 ntBASIC30.11■■■□□ 2.41
CCDC88BA6NC98 AL139327.4-201ENST00000612362 153 ntBASIC30.11■■■□□ 2.41
CCDC88BA6NC98 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC30.11■■■□□ 2.41
CCDC88BA6NC98 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 NMU-203ENST00000507338 658 ntTSL 3 BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC30.1■■■□□ 2.41
CCDC88BA6NC98 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms