Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 BCAR1-209ENST00000546196 1340 ntBASIC19.6■□□□□ 0.73
VTA1Q9NP79 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 KRT19P2-202ENST00000557173 1012 ntBASIC19.6■□□□□ 0.73
VTA1Q9NP79 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 AL355385.1-201ENST00000606123 409 ntBASIC19.6■□□□□ 0.73
VTA1Q9NP79 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.6■□□□□ 0.73
VTA1Q9NP79 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VTA1Q9NP79 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 ELL2P1-201ENST00000413990 1906 ntBASIC19.59■□□□□ 0.73
VTA1Q9NP79 AL590787.1-201ENST00000568856 1315 ntBASIC19.59■□□□□ 0.73
VTA1Q9NP79 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VTA1Q9NP79 PI4KAP1-204ENST00000612579 1703 ntBASIC19.59■□□□□ 0.73
VTA1Q9NP79 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VTA1Q9NP79 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VTA1Q9NP79 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
VTA1Q9NP79 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
VTA1Q9NP79 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VTA1Q9NP79 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.58■□□□□ 0.73
VTA1Q9NP79 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VTA1Q9NP79 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VTA1Q9NP79 KRT18P28-201ENST00000453838 1332 ntBASIC19.58■□□□□ 0.73
VTA1Q9NP79 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VTA1Q9NP79 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VTA1Q9NP79 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VTA1Q9NP79 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VTA1Q9NP79 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
VTA1Q9NP79 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.58■□□□□ 0.72
VTA1Q9NP79 HMGN1P19-201ENST00000436976 333 ntBASIC19.58■□□□□ 0.72
VTA1Q9NP79 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.58■□□□□ 0.72
VTA1Q9NP79 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
VTA1Q9NP79 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VTA1Q9NP79 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.58■□□□□ 0.72
VTA1Q9NP79 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.58■□□□□ 0.72
VTA1Q9NP79 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.58■□□□□ 0.72
VTA1Q9NP79 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VTA1Q9NP79 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.58■□□□□ 0.72
VTA1Q9NP79 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms