Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 MIR718-201ENST00000390190 70 ntBASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 RBM17P1-201ENST00000453646 1190 ntBASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 AC104390.1-201ENST00000555663 520 ntBASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 C2orf69P3-201ENST00000565542 1120 ntBASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 MIR4785-201ENST00000585005 73 ntBASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 AL023803.3-201ENST00000615559 522 ntBASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.21■□□□□ 0.02
CHMP1AQ9HD42 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
CHMP1AQ9HD42 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
CHMP1AQ9HD42 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CHMP1AQ9HD42 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
CHMP1AQ9HD42 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CHMP1AQ9HD42 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 MIR3180-4-201ENST00000582223 153 ntBASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 AP000525.1-201ENST00000608286 694 ntBASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 LINC00602-201ENST00000629776 2065 ntBASIC15.2■□□□□ 0.02
CHMP1AQ9HD42 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 AL024508.2-201ENST00000607749 1894 ntBASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 MIR1238-201ENST00000408483 83 ntBASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 AL390955.1-201ENST00000428694 934 ntBASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 AC010240.3-201ENST00000607688 395 ntBASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms