Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM4Q9C037 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM4Q9C037 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRIM4Q9C037 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM4Q9C037 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
TRIM4Q9C037 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
TRIM4Q9C037 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM4Q9C037 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM4Q9C037 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM4Q9C037 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM4Q9C037 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.64■□□□□ 0.41
TRIM4Q9C037 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 NPAP1P7-201ENST00000613027 823 ntBASIC17.64■□□□□ 0.41
TRIM4Q9C037 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM4Q9C037 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 AC096733.2-201ENST00000609937 1394 ntBASIC17.64■□□□□ 0.41
TRIM4Q9C037 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM4Q9C037 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 FAAHP1-202ENST00000446499 1238 ntBASIC17.63■□□□□ 0.41
TRIM4Q9C037 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 AL512604.3-201ENST00000569583 964 ntBASIC17.63■□□□□ 0.41
TRIM4Q9C037 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 AC092329.2-201ENST00000598402 547 ntBASIC17.63■□□□□ 0.41
TRIM4Q9C037 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 AL357033.4-201ENST00000617703 1807 ntBASIC17.63■□□□□ 0.41
TRIM4Q9C037 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM4Q9C037 LINC01311-201ENST00000565162 1445 ntBASIC17.63■□□□□ 0.41
TRIM4Q9C037 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM4Q9C037 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms