Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
NPAS1Q99742 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
NPAS1Q99742 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
NPAS1Q99742 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
NPAS1Q99742 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.05■□□□□ 0.16
NPAS1Q99742 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.05■□□□□ 0.16
NPAS1Q99742 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.05■□□□□ 0.16
NPAS1Q99742 AC008894.3-201ENST00000624324 3103 ntBASIC16.05■□□□□ 0.16
NPAS1Q99742 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.05■□□□□ 0.16
NPAS1Q99742 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
NPAS1Q99742 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
NPAS1Q99742 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPAS1Q99742 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.04■□□□□ 0.16
NPAS1Q99742 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.04■□□□□ 0.16
NPAS1Q99742 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.04■□□□□ 0.16
NPAS1Q99742 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
NPAS1Q99742 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.04■□□□□ 0.16
NPAS1Q99742 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.04■□□□□ 0.16
NPAS1Q99742 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.04■□□□□ 0.16
NPAS1Q99742 DDX43P3-201ENST00000441064 443 ntBASIC16.04■□□□□ 0.16
NPAS1Q99742 UNC93B7-201ENST00000509439 705 ntBASIC16.04■□□□□ 0.16
NPAS1Q99742 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.04■□□□□ 0.16
NPAS1Q99742 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.04■□□□□ 0.16
NPAS1Q99742 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.04■□□□□ 0.16
NPAS1Q99742 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.04■□□□□ 0.16
NPAS1Q99742 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.04■□□□□ 0.16
NPAS1Q99742 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 AC011467.2-201ENST00000598425 242 ntBASIC16.04■□□□□ 0.16
NPAS1Q99742 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.04■□□□□ 0.16
NPAS1Q99742 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.04■□□□□ 0.16
NPAS1Q99742 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
NPAS1Q99742 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.04■□□□□ 0.16
NPAS1Q99742 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
NPAS1Q99742 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NPAS1Q99742 INTS4P1-201ENST00000438455 1935 ntBASIC16.04■□□□□ 0.16
NPAS1Q99742 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.03■□□□□ 0.16
NPAS1Q99742 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.03■□□□□ 0.16
NPAS1Q99742 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.03■□□□□ 0.16
NPAS1Q99742 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.03■□□□□ 0.16
NPAS1Q99742 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
NPAS1Q99742 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
NPAS1Q99742 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.03■□□□□ 0.16
NPAS1Q99742 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
NPAS1Q99742 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.03■□□□□ 0.16
NPAS1Q99742 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
NPAS1Q99742 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
NPAS1Q99742 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NPAS1Q99742 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.03■□□□□ 0.16
NPAS1Q99742 NUS1P1-201ENST00000446295 882 ntBASIC16.03■□□□□ 0.16
NPAS1Q99742 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms