Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 AC132008.2-207ENST00000454517 770 ntBASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 AC112698.1-201ENST00000510299 916 ntBASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 AL662844.1-201ENST00000546340 181 ntBASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 AC090164.3-201ENST00000610780 2143 ntBASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP3Q96DZ5 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 CROCCP1-201ENST00000426910 5675 ntBASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 AL138831.2-201ENST00000606564 490 ntBASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP3Q96DZ5 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CLIP3Q96DZ5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17■□□□□ 0.31
CLIP3Q96DZ5 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CLIP3Q96DZ5 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17■□□□□ 0.31
CLIP3Q96DZ5 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CLIP3Q96DZ5 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
CLIP3Q96DZ5 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 AC125634.1-201ENST00000438758 1403 ntBASIC17■□□□□ 0.31
CLIP3Q96DZ5 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLIP3Q96DZ5 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17■□□□□ 0.31
CLIP3Q96DZ5 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17■□□□□ 0.31
CLIP3Q96DZ5 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms