Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 AC009154.2-201ENST00000621177 724 ntBASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 FICD-205ENST00000552758 603 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 AL031008.1-201ENST00000619963 541 ntBASIC21■□□□□ 0.95
CHMP4CQ96CF2 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21■□□□□ 0.95
CHMP4CQ96CF2 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP4CQ96CF2 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 LINC01451-201ENST00000623792 534 ntBASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP4CQ96CF2 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 RCN1P2-201ENST00000398357 915 ntBASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 KRT16P4-201ENST00000453883 522 ntBASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 AC009078.2-202ENST00000463353 338 ntBASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.98■□□□□ 0.95
CHMP4CQ96CF2 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC020916.1-201ENST00000587762 1774 ntBASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 AC012317.2-201ENST00000623305 2251 ntBASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4CQ96CF2 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms