Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.65■□□□□ 0.42
TTC28Q96AY4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.65■□□□□ 0.42
TTC28Q96AY4 AC093004.1-201ENST00000508850 424 ntBASIC17.65■□□□□ 0.42
TTC28Q96AY4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.42
TTC28Q96AY4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
TTC28Q96AY4 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TTC28Q96AY4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
TTC28Q96AY4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.64■□□□□ 0.42
TTC28Q96AY4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.42
TTC28Q96AY4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.42
TTC28Q96AY4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.64■□□□□ 0.42
TTC28Q96AY4 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 AC012676.1-201ENST00000574705 1949 ntBASIC17.64■□□□□ 0.41
TTC28Q96AY4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 MIR6775-201ENST00000617557 69 ntBASIC17.64■□□□□ 0.41
TTC28Q96AY4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TTC28Q96AY4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TTC28Q96AY4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 AL158211.5-201ENST00000623583 2518 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 BTBD6P1-201ENST00000412176 1267 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 PDIA3P1-201ENST00000471856 1510 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 AL513480.1-201ENST00000451731 511 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 AL645728.2-201ENST00000641974 660 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TTC28Q96AY4 AL499627.1-201ENST00000569373 2188 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 SLC7A15P-201ENST00000424028 1363 ntBASIC17.63■□□□□ 0.41
TTC28Q96AY4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TTC28Q96AY4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 WASH4P-201ENST00000564273 1246 ntBASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms