Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 DUSP5P1-201ENST00000441325 1139 ntBASIC17.19■□□□□ 0.34
VRK3Q8IV63 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 AC132008.2-207ENST00000454517 770 ntBASIC17.19■□□□□ 0.34
VRK3Q8IV63 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 AC132938.5-201ENST00000624980 1813 ntBASIC17.19■□□□□ 0.34
VRK3Q8IV63 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VRK3Q8IV63 AL138688.1-201ENST00000624851 1594 ntBASIC17.19■□□□□ 0.34
VRK3Q8IV63 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.19■□□□□ 0.34
VRK3Q8IV63 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 CROCCP2-202ENST00000412962 2773 ntBASIC17.18■□□□□ 0.34
VRK3Q8IV63 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.18■□□□□ 0.34
VRK3Q8IV63 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 AL139327.4-201ENST00000612362 153 ntBASIC17.18■□□□□ 0.34
VRK3Q8IV63 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VRK3Q8IV63 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.18■□□□□ 0.34
VRK3Q8IV63 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 AL645608.8-201ENST00000606034 2086 ntBASIC17.17■□□□□ 0.34
VRK3Q8IV63 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms