Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP54Q70EL1 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
USP54Q70EL1 AL135744.1-201ENST00000565098 629 ntBASIC23.21■■□□□ 1.31
USP54Q70EL1 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP54Q70EL1 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP54Q70EL1 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP54Q70EL1 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC23.21■■□□□ 1.31
USP54Q70EL1 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC23.2■■□□□ 1.31
USP54Q70EL1 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC23.2■■□□□ 1.3
USP54Q70EL1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
USP54Q70EL1 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
USP54Q70EL1 FAM185BP-201ENST00000443595 716 ntBASIC23.2■■□□□ 1.3
USP54Q70EL1 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC23.2■■□□□ 1.3
USP54Q70EL1 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC23.2■■□□□ 1.3
USP54Q70EL1 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
USP54Q70EL1 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC23.2■■□□□ 1.3
USP54Q70EL1 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
USP54Q70EL1 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
USP54Q70EL1 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
USP54Q70EL1 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP54Q70EL1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC23.2■■□□□ 1.3
USP54Q70EL1 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC23.2■■□□□ 1.3
USP54Q70EL1 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP54Q70EL1 NEK7-201ENST00000367383 586 ntTSL 2 BASIC23.19■■□□□ 1.3
USP54Q70EL1 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
USP54Q70EL1 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP54Q70EL1 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP54Q70EL1 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC23.19■■□□□ 1.3
USP54Q70EL1 AC005498.2-205ENST00000593218 784 ntBASIC23.19■■□□□ 1.3
USP54Q70EL1 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
USP54Q70EL1 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC23.19■■□□□ 1.3
USP54Q70EL1 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP54Q70EL1 BSG-215ENST00000618006 1329 ntTSL 2 BASIC23.19■■□□□ 1.3
USP54Q70EL1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP54Q70EL1 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
USP54Q70EL1 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP54Q70EL1 BICD1-207ENST00000551848 1962 ntBASIC23.19■■□□□ 1.3
USP54Q70EL1 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC23.19■■□□□ 1.3
USP54Q70EL1 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP54Q70EL1 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP54Q70EL1 KRT8P48-201ENST00000515599 1220 ntBASIC23.19■■□□□ 1.3
USP54Q70EL1 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC23.19■■□□□ 1.3
USP54Q70EL1 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC23.19■■□□□ 1.3
USP54Q70EL1 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC23.19■■□□□ 1.3
USP54Q70EL1 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC23.19■■□□□ 1.3
USP54Q70EL1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC23.19■■□□□ 1.3
USP54Q70EL1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC23.19■■□□□ 1.3
USP54Q70EL1 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP54Q70EL1 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC23.18■■□□□ 1.3
USP54Q70EL1 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP54Q70EL1 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP54Q70EL1 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP54Q70EL1 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC23.18■■□□□ 1.3
USP54Q70EL1 SLBP-205ENST00000488267 987 ntTSL 2 BASIC23.18■■□□□ 1.3
USP54Q70EL1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP54Q70EL1 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC23.18■■□□□ 1.3
USP54Q70EL1 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
USP54Q70EL1 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC23.18■■□□□ 1.3
USP54Q70EL1 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
USP54Q70EL1 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC23.18■■□□□ 1.3
USP54Q70EL1 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC23.17■■□□□ 1.3
USP54Q70EL1 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC23.17■■□□□ 1.3
USP54Q70EL1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC23.17■■□□□ 1.3
USP54Q70EL1 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC23.17■■□□□ 1.3
USP54Q70EL1 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC23.17■■□□□ 1.3
USP54Q70EL1 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 GPS2P2-201ENST00000430745 888 ntBASIC23.17■■□□□ 1.3
USP54Q70EL1 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC23.17■■□□□ 1.3
USP54Q70EL1 DUX4L17-201ENST00000557360 1267 ntBASIC23.17■■□□□ 1.3
USP54Q70EL1 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC23.17■■□□□ 1.3
USP54Q70EL1 MIR3909-201ENST00000579518 119 ntBASIC23.17■■□□□ 1.3
USP54Q70EL1 MIR3197-201ENST00000582241 73 ntBASIC23.17■■□□□ 1.3
USP54Q70EL1 AC093512.1-201ENST00000617969 520 ntBASIC23.17■■□□□ 1.3
USP54Q70EL1 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC23.17■■□□□ 1.3
USP54Q70EL1 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
USP54Q70EL1 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC23.17■■□□□ 1.3
USP54Q70EL1 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC23.17■■□□□ 1.3
USP54Q70EL1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC23.17■■□□□ 1.3
USP54Q70EL1 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP54Q70EL1 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms