Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PGM5P2-202ENST00000637225 1043 ntBASIC17.9■□□□□ 0.46
USP39Q53GS9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.9■□□□□ 0.46
USP39Q53GS9 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.9■□□□□ 0.46
USP39Q53GS9 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.9■□□□□ 0.46
USP39Q53GS9 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.9■□□□□ 0.46
USP39Q53GS9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
USP39Q53GS9 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
USP39Q53GS9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
USP39Q53GS9 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.89■□□□□ 0.45
USP39Q53GS9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.89■□□□□ 0.45
USP39Q53GS9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.89■□□□□ 0.45
USP39Q53GS9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.89■□□□□ 0.45
USP39Q53GS9 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.89■□□□□ 0.45
USP39Q53GS9 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.89■□□□□ 0.45
USP39Q53GS9 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.89■□□□□ 0.45
USP39Q53GS9 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 MTDHP5-201ENST00000598980 586 ntBASIC17.89■□□□□ 0.45
USP39Q53GS9 AL355385.1-201ENST00000606123 409 ntBASIC17.89■□□□□ 0.45
USP39Q53GS9 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.89■□□□□ 0.45
USP39Q53GS9 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP39Q53GS9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.89■□□□□ 0.45
USP39Q53GS9 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.89■□□□□ 0.45
USP39Q53GS9 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
USP39Q53GS9 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.88■□□□□ 0.45
USP39Q53GS9 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.88■□□□□ 0.45
USP39Q53GS9 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.88■□□□□ 0.45
USP39Q53GS9 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.88■□□□□ 0.45
USP39Q53GS9 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.88■□□□□ 0.45
USP39Q53GS9 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
USP39Q53GS9 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.88■□□□□ 0.45
USP39Q53GS9 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.88■□□□□ 0.45
USP39Q53GS9 AC005593.1-201ENST00000624894 515 ntBASIC17.88■□□□□ 0.45
USP39Q53GS9 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.88■□□□□ 0.45
USP39Q53GS9 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.88■□□□□ 0.45
USP39Q53GS9 AL022326.1-202ENST00000641533 845 ntBASIC17.88■□□□□ 0.45
USP39Q53GS9 AC134684.3-201ENST00000641758 218 ntBASIC17.88■□□□□ 0.45
USP39Q53GS9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.88■□□□□ 0.45
USP39Q53GS9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP39Q53GS9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
USP39Q53GS9 AC097374.2-201ENST00000618617 1306 ntBASIC17.88■□□□□ 0.45
USP39Q53GS9 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.88■□□□□ 0.45
USP39Q53GS9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.88■□□□□ 0.45
USP39Q53GS9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
USP39Q53GS9 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.88■□□□□ 0.45
USP39Q53GS9 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.88■□□□□ 0.45
USP39Q53GS9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.88■□□□□ 0.45
USP39Q53GS9 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.87■□□□□ 0.45
USP39Q53GS9 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP39Q53GS9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP39Q53GS9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP39Q53GS9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP39Q53GS9 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP39Q53GS9 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
USP39Q53GS9 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
USP39Q53GS9 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP39Q53GS9 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.87■□□□□ 0.45
USP39Q53GS9 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.87■□□□□ 0.45
USP39Q53GS9 HMGN1P19-201ENST00000436976 333 ntBASIC17.87■□□□□ 0.45
USP39Q53GS9 AC009947.1-201ENST00000444350 727 ntBASIC17.87■□□□□ 0.45
USP39Q53GS9 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.87■□□□□ 0.45
USP39Q53GS9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP39Q53GS9 BX005266.1-201ENST00000473402 457 ntBASIC17.87■□□□□ 0.45
USP39Q53GS9 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms