Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX4Q33E94 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX4Q33E94 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX4Q33E94 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.41■□□□□ 0.22
RFX4Q33E94 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX4Q33E94 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX4Q33E94 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX4Q33E94 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX4Q33E94 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RFX4Q33E94 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RFX4Q33E94 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX4Q33E94 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RFX4Q33E94 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RFX4Q33E94 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RFX4Q33E94 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
RFX4Q33E94 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RFX4Q33E94 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
RFX4Q33E94 AC007663.1-201ENST00000438948 1240 ntBASIC16.4■□□□□ 0.22
RFX4Q33E94 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.4■□□□□ 0.22
RFX4Q33E94 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX4Q33E94 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.4■□□□□ 0.22
RFX4Q33E94 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 AC008687.5-201ENST00000593746 558 ntBASIC16.4■□□□□ 0.22
RFX4Q33E94 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX4Q33E94 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX4Q33E94 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.39■□□□□ 0.22
RFX4Q33E94 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
RFX4Q33E94 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
RFX4Q33E94 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
RFX4Q33E94 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
RFX4Q33E94 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
RFX4Q33E94 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.39■□□□□ 0.21
RFX4Q33E94 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 REXO1L11P-201ENST00000620964 1927 ntBASIC16.39■□□□□ 0.21
RFX4Q33E94 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
RFX4Q33E94 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RFX4Q33E94 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.39■□□□□ 0.21
RFX4Q33E94 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.39■□□□□ 0.21
RFX4Q33E94 DDX43P3-201ENST00000441064 443 ntBASIC16.39■□□□□ 0.21
RFX4Q33E94 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.39■□□□□ 0.21
RFX4Q33E94 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.39■□□□□ 0.21
RFX4Q33E94 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.39■□□□□ 0.21
RFX4Q33E94 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.39■□□□□ 0.21
RFX4Q33E94 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
RFX4Q33E94 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
RFX4Q33E94 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.39■□□□□ 0.21
RFX4Q33E94 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
RFX4Q33E94 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.39■□□□□ 0.21
RFX4Q33E94 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX4Q33E94 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.38■□□□□ 0.21
RFX4Q33E94 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.38■□□□□ 0.21
RFX4Q33E94 AL603756.1-201ENST00000606511 2163 ntBASIC16.38■□□□□ 0.21
RFX4Q33E94 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.38■□□□□ 0.21
RFX4Q33E94 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
RFX4Q33E94 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms