Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 DNAJB3-201ENST00000446806 729 ntBASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 DNAJB3-202ENST00000449667 1266 ntBASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 IGHV3-52-201ENST00000519770 353 ntBASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 AL805961.1-202ENST00000641562 540 ntBASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.45■□□□□ 0.87
SHROOM1Q2M3G4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 BICD1-207ENST00000551848 1962 ntBASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 AC002558.1-201ENST00000488906 803 ntBASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 MIR3687-2-201ENST00000577708 61 ntBASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 MIR3687-1-201ENST00000614492 61 ntBASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 AC010507.1-201ENST00000633895 436 ntBASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM1Q2M3G4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 GPR89P-201ENST00000407924 1495 ntBASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 MCCD1P2-201ENST00000423228 335 ntBASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 HTR5BP-201ENST00000430851 1154 ntBASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 AL078644.1-201ENST00000609881 752 ntBASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM1Q2M3G4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SHROOM1Q2M3G4 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms