Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CYP51A1P2-201ENST00000419457 1499 ntBASIC24.18■■□□□ 1.46
MSH6P52701 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC24.18■■□□□ 1.46
MSH6P52701 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC24.18■■□□□ 1.46
MSH6P52701 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC24.17■■□□□ 1.46
MSH6P52701 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC24.17■■□□□ 1.46
MSH6P52701 IGHV3-52-201ENST00000519770 353 ntBASIC24.17■■□□□ 1.46
MSH6P52701 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC24.17■■□□□ 1.46
MSH6P52701 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC24.17■■□□□ 1.46
MSH6P52701 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
MSH6P52701 RAB34-224ENST00000636513 888 ntTSL 5 BASIC24.17■■□□□ 1.46
MSH6P52701 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 AC008677.1-201ENST00000519230 1561 ntBASIC24.17■■□□□ 1.46
MSH6P52701 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
MSH6P52701 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC24.17■■□□□ 1.46
MSH6P52701 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
MSH6P52701 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 ACTG1P4-201ENST00000425123 1122 ntBASIC24.16■■□□□ 1.46
MSH6P52701 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC24.16■■□□□ 1.46
MSH6P52701 ATP5G2P4-201ENST00000442175 420 ntBASIC24.16■■□□□ 1.46
MSH6P52701 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC24.16■■□□□ 1.46
MSH6P52701 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC24.16■■□□□ 1.46
MSH6P52701 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC24.16■■□□□ 1.46
MSH6P52701 SERBP1P5-201ENST00000510079 1181 ntBASIC24.16■■□□□ 1.46
MSH6P52701 RARRES2P8-201ENST00000566335 367 ntBASIC24.16■■□□□ 1.46
MSH6P52701 AL662799.1-202ENST00000614205 422 ntBASIC24.16■■□□□ 1.46
MSH6P52701 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC24.16■■□□□ 1.46
MSH6P52701 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC24.16■■□□□ 1.46
MSH6P52701 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC24.16■■□□□ 1.46
MSH6P52701 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
MSH6P52701 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC24.16■■□□□ 1.46
MSH6P52701 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 SPDYE7P-202ENST00000420373 878 ntBASIC24.16■■□□□ 1.46
MSH6P52701 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 SPDYE14P-201ENST00000442619 822 ntBASIC24.16■■□□□ 1.46
MSH6P52701 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
MSH6P52701 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC24.16■■□□□ 1.46
MSH6P52701 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
MSH6P52701 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC24.16■■□□□ 1.46
MSH6P52701 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
MSH6P52701 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH6P52701 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC24.15■■□□□ 1.46
MSH6P52701 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
MSH6P52701 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC24.15■■□□□ 1.46
MSH6P52701 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC24.15■■□□□ 1.46
MSH6P52701 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC24.15■■□□□ 1.46
MSH6P52701 AC069120.2-201ENST00000524091 540 ntBASIC24.15■■□□□ 1.46
MSH6P52701 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC24.15■■□□□ 1.46
MSH6P52701 AC026150.2-201ENST00000564693 1156 ntBASIC24.15■■□□□ 1.46
MSH6P52701 COQ9-214ENST00000567933 882 ntTSL 3 BASIC24.15■■□□□ 1.46
MSH6P52701 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC24.15■■□□□ 1.46
MSH6P52701 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH6P52701 AKAP8P1-201ENST00000434743 1349 ntBASIC24.15■■□□□ 1.46
MSH6P52701 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
MSH6P52701 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC24.14■■□□□ 1.46
MSH6P52701 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC24.14■■□□□ 1.46
MSH6P52701 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
MSH6P52701 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC24.14■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms