Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 CNN2P11-201ENST00000429351 262 ntBASIC20.4■□□□□ 0.86
COL2A1P02458 FAM58CP-201ENST00000435741 640 ntBASIC20.4■□□□□ 0.86
COL2A1P02458 METTL21AP1-201ENST00000438852 635 ntBASIC20.4■□□□□ 0.86
COL2A1P02458 FAM185BP-201ENST00000443595 716 ntBASIC20.4■□□□□ 0.86
COL2A1P02458 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.4■□□□□ 0.86
COL2A1P02458 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.4■□□□□ 0.86
COL2A1P02458 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.4■□□□□ 0.86
COL2A1P02458 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL2A1P02458 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL2A1P02458 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.4■□□□□ 0.86
COL2A1P02458 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL2A1P02458 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.4■□□□□ 0.86
COL2A1P02458 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.39■□□□□ 0.86
COL2A1P02458 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL2A1P02458 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.39■□□□□ 0.86
COL2A1P02458 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
COL2A1P02458 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 CD82-202ENST00000342935 967 ntTSL 5 BASIC20.39■□□□□ 0.85
COL2A1P02458 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.39■□□□□ 0.85
COL2A1P02458 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.39■□□□□ 0.85
COL2A1P02458 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC20.39■□□□□ 0.85
COL2A1P02458 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC20.39■□□□□ 0.85
COL2A1P02458 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC20.39■□□□□ 0.85
COL2A1P02458 AL354751.1-201ENST00000412768 1863 ntBASIC20.39■□□□□ 0.85
COL2A1P02458 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.39■□□□□ 0.85
COL2A1P02458 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.39■□□□□ 0.85
COL2A1P02458 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.39■□□□□ 0.85
COL2A1P02458 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL2A1P02458 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
COL2A1P02458 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL2A1P02458 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
COL2A1P02458 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL2A1P02458 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL2A1P02458 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.38■□□□□ 0.85
COL2A1P02458 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL2A1P02458 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL2A1P02458 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.38■□□□□ 0.85
COL2A1P02458 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
COL2A1P02458 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL2A1P02458 AL596442.2-201ENST00000610240 980 ntBASIC20.38■□□□□ 0.85
COL2A1P02458 AC092902.6-201ENST00000641783 218 ntBASIC20.38■□□□□ 0.85
COL2A1P02458 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.38■□□□□ 0.85
COL2A1P02458 AC129492.6-201ENST00000611383 1305 ntBASIC20.38■□□□□ 0.85
COL2A1P02458 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
COL2A1P02458 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL2A1P02458 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.38■□□□□ 0.85
COL2A1P02458 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL2A1P02458 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 CEND1P1-201ENST00000451006 455 ntBASIC20.37■□□□□ 0.85
COL2A1P02458 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC20.37■□□□□ 0.85
COL2A1P02458 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC20.37■□□□□ 0.85
COL2A1P02458 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.37■□□□□ 0.85
COL2A1P02458 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL2A1P02458 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.37■□□□□ 0.85
COL2A1P02458 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
COL2A1P02458 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.37■□□□□ 0.85
COL2A1P02458 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.37■□□□□ 0.85
COL2A1P02458 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.37■□□□□ 0.85
COL2A1P02458 SNHG9-202ENST00000564014 471 ntBASIC20.37■□□□□ 0.85
COL2A1P02458 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL2A1P02458 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL2A1P02458 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
COL2A1P02458 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL2A1P02458 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.36■□□□□ 0.85
COL2A1P02458 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
COL2A1P02458 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.36■□□□□ 0.85
COL2A1P02458 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
COL2A1P02458 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL2A1P02458 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms