Protein–RNA interactions for Protein: P01033

TIMP1, Metalloproteinase inhibitor 1, humanhuman

Predictions only

Length 207 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1P01033 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
TIMP1P01033 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TIMP1P01033 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 AL031598.1-201ENST00000561511 1773 ntBASIC18.89■□□□□ 0.61
TIMP1P01033 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.89■□□□□ 0.61
TIMP1P01033 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
TIMP1P01033 GPS2P2-201ENST00000430745 888 ntBASIC18.89■□□□□ 0.61
TIMP1P01033 SLC25A6P2-201ENST00000497974 877 ntBASIC18.89■□□□□ 0.61
TIMP1P01033 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.89■□□□□ 0.61
TIMP1P01033 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.89■□□□□ 0.61
TIMP1P01033 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.89■□□□□ 0.61
TIMP1P01033 LINC02560-201ENST00000596379 459 ntBASIC18.89■□□□□ 0.61
TIMP1P01033 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.89■□□□□ 0.61
TIMP1P01033 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.89■□□□□ 0.61
TIMP1P01033 AC008761.3-201ENST00000624803 892 ntBASIC18.89■□□□□ 0.61
TIMP1P01033 AL645728.2-201ENST00000641974 660 ntBASIC18.89■□□□□ 0.61
TIMP1P01033 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
TIMP1P01033 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TIMP1P01033 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TIMP1P01033 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.88■□□□□ 0.61
TIMP1P01033 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
TIMP1P01033 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
TIMP1P01033 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.88■□□□□ 0.61
TIMP1P01033 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.88■□□□□ 0.61
TIMP1P01033 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TIMP1P01033 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.88■□□□□ 0.61
TIMP1P01033 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.88■□□□□ 0.61
TIMP1P01033 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TIMP1P01033 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.88■□□□□ 0.61
TIMP1P01033 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
TIMP1P01033 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 AC073592.3-201ENST00000625118 1834 ntBASIC18.88■□□□□ 0.61
TIMP1P01033 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.88■□□□□ 0.61
TIMP1P01033 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TIMP1P01033 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.87■□□□□ 0.61
TIMP1P01033 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.87■□□□□ 0.61
TIMP1P01033 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.87■□□□□ 0.61
TIMP1P01033 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.87■□□□□ 0.61
TIMP1P01033 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
TIMP1P01033 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.87■□□□□ 0.61
TIMP1P01033 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.87■□□□□ 0.61
TIMP1P01033 AC125807.1-201ENST00000483097 614 ntBASIC18.87■□□□□ 0.61
TIMP1P01033 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.87■□□□□ 0.61
TIMP1P01033 AC140878.1-201ENST00000565277 250 ntBASIC18.87■□□□□ 0.61
TIMP1P01033 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
TIMP1P01033 FO538757.1-201ENST00000623083 1397 ntBASIC18.87■□□□□ 0.61
TIMP1P01033 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TIMP1P01033 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 AC116562.4-201ENST00000641316 2276 ntBASIC18.86■□□□□ 0.61
TIMP1P01033 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TIMP1P01033 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.86■□□□□ 0.61
TIMP1P01033 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 AKAP8P1-201ENST00000434743 1349 ntBASIC18.86■□□□□ 0.61
TIMP1P01033 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP1P01033 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms