Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLPTM1O96005 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLPTM1O96005 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CLPTM1O96005 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.69■□□□□ 0.26
CLPTM1O96005 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CLPTM1O96005 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
CLPTM1O96005 NIFKP9-201ENST00000419265 221 ntBASIC16.68■□□□□ 0.26
CLPTM1O96005 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.68■□□□□ 0.26
CLPTM1O96005 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.68■□□□□ 0.26
CLPTM1O96005 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.68■□□□□ 0.26
CLPTM1O96005 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.68■□□□□ 0.26
CLPTM1O96005 CD177P1-201ENST00000606252 935 ntBASIC16.68■□□□□ 0.26
CLPTM1O96005 AC073195.1-201ENST00000607241 877 ntBASIC16.68■□□□□ 0.26
CLPTM1O96005 AL353708.3-201ENST00000610272 989 ntBASIC16.68■□□□□ 0.26
CLPTM1O96005 CR392000.1-201ENST00000624770 1228 ntBASIC16.68■□□□□ 0.26
CLPTM1O96005 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.68■□□□□ 0.26
CLPTM1O96005 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.68■□□□□ 0.26
CLPTM1O96005 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLPTM1O96005 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLPTM1O96005 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CLPTM1O96005 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.68■□□□□ 0.26
CLPTM1O96005 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.67■□□□□ 0.26
CLPTM1O96005 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.67■□□□□ 0.26
CLPTM1O96005 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.67■□□□□ 0.26
CLPTM1O96005 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.67■□□□□ 0.26
CLPTM1O96005 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.67■□□□□ 0.26
CLPTM1O96005 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.67■□□□□ 0.26
CLPTM1O96005 MIR4497-201ENST00000583208 89 ntBASIC16.67■□□□□ 0.26
CLPTM1O96005 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CLPTM1O96005 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.67■□□□□ 0.26
CLPTM1O96005 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
CLPTM1O96005 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CLPTM1O96005 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.67■□□□□ 0.26
CLPTM1O96005 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CLPTM1O96005 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.67■□□□□ 0.26
CLPTM1O96005 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLPTM1O96005 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CLPTM1O96005 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CLPTM1O96005 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CLPTM1O96005 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 AC023824.1-201ENST00000562945 2975 ntBASIC16.66■□□□□ 0.26
CLPTM1O96005 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
CLPTM1O96005 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 KSR1P1-201ENST00000446298 240 ntBASIC16.66■□□□□ 0.26
CLPTM1O96005 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLPTM1O96005 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
CLPTM1O96005 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.66■□□□□ 0.26
CLPTM1O96005 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.66■□□□□ 0.26
CLPTM1O96005 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.66■□□□□ 0.26
CLPTM1O96005 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.66■□□□□ 0.26
CLPTM1O96005 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.66■□□□□ 0.26
CLPTM1O96005 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.66■□□□□ 0.26
CLPTM1O96005 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.66■□□□□ 0.26
CLPTM1O96005 HLA-A-209ENST00000638375 975 ntBASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms