Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
UBFD1O14562 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.09■□□□□ 0.33
UBFD1O14562 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
UBFD1O14562 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
UBFD1O14562 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
UBFD1O14562 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.09■□□□□ 0.33
UBFD1O14562 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
UBFD1O14562 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.09■□□□□ 0.33
UBFD1O14562 AC005521.1-201ENST00000393351 872 ntBASIC17.09■□□□□ 0.33
UBFD1O14562 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.09■□□□□ 0.33
UBFD1O14562 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.09■□□□□ 0.33
UBFD1O14562 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
UBFD1O14562 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.09■□□□□ 0.33
UBFD1O14562 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.09■□□□□ 0.33
UBFD1O14562 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.09■□□□□ 0.33
UBFD1O14562 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.09■□□□□ 0.33
UBFD1O14562 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.09■□□□□ 0.33
UBFD1O14562 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.09■□□□□ 0.33
UBFD1O14562 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
UBFD1O14562 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.09■□□□□ 0.33
UBFD1O14562 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UBFD1O14562 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
UBFD1O14562 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
UBFD1O14562 AL118508.1-201ENST00000613502 2345 ntBASIC17.08■□□□□ 0.33
UBFD1O14562 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.08■□□□□ 0.33
UBFD1O14562 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.08■□□□□ 0.33
UBFD1O14562 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
UBFD1O14562 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
UBFD1O14562 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
UBFD1O14562 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.08■□□□□ 0.33
UBFD1O14562 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
UBFD1O14562 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
UBFD1O14562 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
UBFD1O14562 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
UBFD1O14562 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.08■□□□□ 0.32
UBFD1O14562 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.08■□□□□ 0.32
UBFD1O14562 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.08■□□□□ 0.32
UBFD1O14562 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.08■□□□□ 0.32
UBFD1O14562 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
UBFD1O14562 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 TSPY5P-201ENST00000426936 936 ntBASIC17.08■□□□□ 0.32
UBFD1O14562 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.08■□□□□ 0.32
UBFD1O14562 SPDYE13P-201ENST00000445314 798 ntBASIC17.08■□□□□ 0.32
UBFD1O14562 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.08■□□□□ 0.32
UBFD1O14562 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.08■□□□□ 0.32
UBFD1O14562 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.08■□□□□ 0.32
UBFD1O14562 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.08■□□□□ 0.32
UBFD1O14562 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
UBFD1O14562 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.08■□□□□ 0.32
UBFD1O14562 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.08■□□□□ 0.32
UBFD1O14562 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.08■□□□□ 0.32
UBFD1O14562 AC006011.2-201ENST00000621313 1158 ntBASIC17.08■□□□□ 0.32
UBFD1O14562 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
UBFD1O14562 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UBFD1O14562 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
UBFD1O14562 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
UBFD1O14562 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
UBFD1O14562 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.07■□□□□ 0.32
UBFD1O14562 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 UBALD1-205ENST00000590891 2641 ntBASIC17.07■□□□□ 0.32
UBFD1O14562 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
UBFD1O14562 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.07■□□□□ 0.32
UBFD1O14562 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
UBFD1O14562 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
UBFD1O14562 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.07■□□□□ 0.32
UBFD1O14562 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
UBFD1O14562 AC112907.2-201ENST00000448639 330 ntBASIC17.07■□□□□ 0.32
UBFD1O14562 AL359075.1-203ENST00000462729 1002 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms