Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 HBZP1-201ENST00000354915 429 ntBASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 COX5BP2-201ENST00000392354 334 ntBASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 AC010460.3-201ENST00000511359 1579 ntBASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMA1Q9UHB6 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 LINC02012-201ENST00000608206 1725 ntBASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 AC073508.3-201ENST00000619697 1419 ntBASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMA1Q9UHB6 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 KRT18P38-201ENST00000449496 1282 ntBASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 AC005332.3-201ENST00000589904 676 ntBASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 AL390719.2-201ENST00000606993 987 ntBASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 AC012306.2-201ENST00000609350 630 ntBASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMA1Q9UHB6 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms