Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.63■□□□□ 0.09
MMP28Q9H239 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 MYLKP1-201ENST00000509077 1580 ntBASIC15.62■□□□□ 0.09
MMP28Q9H239 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
MMP28Q9H239 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.62■□□□□ 0.09
MMP28Q9H239 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.62■□□□□ 0.09
MMP28Q9H239 FAM197Y1-201ENST00000421178 764 ntBASIC15.62■□□□□ 0.09
MMP28Q9H239 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.62■□□□□ 0.09
MMP28Q9H239 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 CD177P1-201ENST00000606252 935 ntBASIC15.62■□□□□ 0.09
MMP28Q9H239 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
MMP28Q9H239 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
MMP28Q9H239 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
MMP28Q9H239 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 KRT8P41-201ENST00000533985 1514 ntBASIC15.62■□□□□ 0.09
MMP28Q9H239 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.62■□□□□ 0.09
MMP28Q9H239 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
MMP28Q9H239 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.62■□□□□ 0.09
MMP28Q9H239 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.62■□□□□ 0.09
MMP28Q9H239 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
MMP28Q9H239 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
MMP28Q9H239 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.61■□□□□ 0.09
MMP28Q9H239 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.61■□□□□ 0.09
MMP28Q9H239 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.61■□□□□ 0.09
MMP28Q9H239 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
MMP28Q9H239 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
MMP28Q9H239 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.61■□□□□ 0.09
MMP28Q9H239 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 ABBA01031674.1-201ENST00000635145 728 ntBASIC15.61■□□□□ 0.09
MMP28Q9H239 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.61■□□□□ 0.09
MMP28Q9H239 AL049637.2-201ENST00000641778 930 ntBASIC15.61■□□□□ 0.09
MMP28Q9H239 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 KRT18P55-202ENST00000578578 1546 ntBASIC15.61■□□□□ 0.09
MMP28Q9H239 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 KRT17P2-201ENST00000300992 1314 ntBASIC15.61■□□□□ 0.09
MMP28Q9H239 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
MMP28Q9H239 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.61■□□□□ 0.09
MMP28Q9H239 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 AL136379.1-201ENST00000623471 2642 ntBASIC15.61■□□□□ 0.09
MMP28Q9H239 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MMP28Q9H239 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.6■□□□□ 0.09
MMP28Q9H239 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
MMP28Q9H239 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC15.6■□□□□ 0.09
MMP28Q9H239 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms