Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 GLDC-219ENST00000640208 420 ntTSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 LINC01568-207ENST00000641790 1380 ntBASIC15.43■□□□□ 0.06
NKX3-1Q99801 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 AC018695.7-201ENST00000624587 2492 ntBASIC15.43■□□□□ 0.06
NKX3-1Q99801 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.43■□□□□ 0.06
NKX3-1Q99801 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NKX3-1Q99801 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.42■□□□□ 0.06
NKX3-1Q99801 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 USF2-205ENST00000594064 1179 ntTSL 2 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
NKX3-1Q99801 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
NKX3-1Q99801 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 DUTP2-201ENST00000519164 463 ntBASIC15.41■□□□□ 0.06
NKX3-1Q99801 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 AC009065.1-201ENST00000564055 1225 ntBASIC15.41■□□□□ 0.06
NKX3-1Q99801 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
NKX3-1Q99801 AC106886.4-201ENST00000623557 2502 ntBASIC15.41■□□□□ 0.06
NKX3-1Q99801 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
NKX3-1Q99801 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
NKX3-1Q99801 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
NKX3-1Q99801 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms