Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 CROCCP2-202ENST00000412962 2773 ntBASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 KRT18P31-201ENST00000506277 1292 ntBASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 AC073592.5-201ENST00000624854 528 ntBASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CTHRC1Q96CG8 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 AC009336.1-201ENST00000608941 1553 ntBASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 AC003669.1-201ENST00000334569 611 ntBASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 AC132008.2-207ENST00000454517 770 ntBASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 KRT126P-201ENST00000549467 1181 ntBASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CTHRC1Q96CG8 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 AC106795.1-205ENST00000512851 1056 ntBASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 PRELID1P1-202ENST00000567272 903 ntBASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 AC073592.4-201ENST00000623827 446 ntBASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 AC046185.3-201ENST00000623228 1824 ntBASIC16.3■□□□□ 0.2
CTHRC1Q96CG8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms